(Q34497793)

2 August 2017

Single-cell epigenomics: techniques and emerging applications (English)

1 reference

2 August 2017

Omer Schwartzman

1

0 references

Amos Tanay

series ordinal

2

object named as

Amos Tanay

1 reference

2 August 2017

13 October 2015

1 reference

2 August 2017

Nature Reviews Genetics

1 reference

2 August 2017

16

1 reference

2 August 2017

12

1 reference

2 August 2017

716-726

1 reference

https://scigraph.springernature.com/pub.10.1038/nrg3980

2 August 2017

0 references

cites work

Perceptions of epigenetics

1 reference

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

Integrative analysis of 111 reference human epigenomes

21 January 2018

1 reference

The accessible chromatin landscape of the human genome

21 January 2018

1 reference

A comparative encyclopedia of DNA elements in the mouse genome

21 January 2018

1 reference

Comparative analysis of metazoan chromatin organization

21 January 2018

1 reference

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

21 January 2018

1 reference

Identification of functional elements and regulatory circuits by Drosophila modENCODE

21 January 2018

1 reference

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project

21 January 2018

1 reference

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

21 January 2018

1 reference

Genetic and epigenetic fine mapping of causal autoimmune disease variants

21 January 2018

1 reference

DNA methylation and body-mass index: a genome-wide analysis

21 January 2018

1 reference

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

21 January 2018

1 reference

Epigenomic analysis of primary human T cells reveals enhancers associated with TH2 memory cell differentiation and asthma susceptibility

21 January 2018

1 reference

Transcriptome-wide noise controls lineage choice in mammalian progenitor cells

21 January 2018

1 reference

Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues

21 January 2018

1 reference

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

21 January 2018

1 reference

Mapping and analysis of chromatin state dynamics in nine human cell types

21 January 2018

1 reference

Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 January 2018

1 reference

Determinants of nucleosome positioning

21 January 2018

1 reference

Functions of DNA methylation: islands, start sites, gene bodies and beyond

21 January 2018

1 reference

DNA methylation: roles in mammalian development

21 January 2018

1 reference

Charting a dynamic DNA methylation landscape of the human genome

21 January 2018

1 reference

Function and information content of DNA methylation

21 January 2018

1 reference

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

21 January 2018

1 reference

An expansive human regulatory lexicon encoded in transcription factor footprints

21 January 2018

1 reference

Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

21 January 2018

1 reference

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 January 2018

1 reference

Spatial partitioning of the regulatory landscape of the X-inactivation centre

21 January 2018

1 reference

Three-dimensional folding and functional organization principles of the Drosophila genome

21 January 2018

1 reference

Global reorganization of replication domains during embryonic stem cell differentiation

21 January 2018

1 reference

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

21 January 2018

1 reference

Single-cell dynamics of genome-nuclear lamina interactions

21 January 2018

1 reference

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

21 January 2018

1 reference

Human DNA methylomes at base resolution show widespread epigenomic differences

21 January 2018

1 reference

Advances in the profiling of DNA modifications: cytosine methylation and beyond

21 January 2018

1 reference

Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia

21 January 2018

1 reference

Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers

21 January 2018

1 reference

Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells

21 January 2018

1 reference

Counting absolute numbers of molecules using unique molecular identifiers

21 January 2018

1 reference

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

21 January 2018

1 reference

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

21 January 2018

1 reference

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics

21 January 2018

1 reference

Genomic landscape of human allele-specific DNA methylation.

21 January 2018

1 reference

Single-cell DNA-methylation analysis reveals epigenetic chimerism in preimplantation embryos

21 January 2018

1 reference

Multiplexed locus-specific analysis of DNA methylation in single cells.

21 January 2018

1 reference

Continuous base identification for single-molecule nanopore DNA sequencing

21 January 2018

1 reference

Direct detection of DNA methylation during single-molecule, real-time sequencing

21 January 2018

1 reference

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA.

21 January 2018

1 reference

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription

21 January 2018

1 reference

Programming and inheritance of parental DNA methylomes in mammals

21 January 2018

1 reference

The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

21 January 2018

1 reference

Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates

21 January 2018

1 reference

Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes

21 January 2018

1 reference

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

21 January 2018

1 reference

Nucleosome organization in the Drosophila genome.

21 January 2018

1 reference

Dynamic regulation of nucleosome positioning in the human genome

21 January 2018

1 reference

Genome-scale identification of nucleosome positions in S. cerevisiae

21 January 2018

1 reference

Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors

21 January 2018

1 reference

Immunogenetics. Chromatin state dynamics during blood formation

21 January 2018

1 reference

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations

21 January 2018

1 reference

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing

21 January 2018

1 reference

Single-cell chromatin accessibility reveals principles of regulatory variation

21 January 2018

1 reference

Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase

21 January 2018

1 reference

CRISPR-Cas systems for editing, regulating and targeting genomes

21 January 2018

1 reference

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules

21 January 2018

1 reference

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

21 January 2018

1 reference

The glucocorticoid receptor: rapid exchange with regulatory sites in living cells

21 January 2018

1 reference

Regulation of RNA polymerase II activation by histone acetylation in single living cells.

21 January 2018

1 reference

DNase footprint signatures are dictated by factor dynamics and DNA sequence

21 January 2018

1 reference

Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

21 January 2018

1 reference

Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes

21 January 2018

1 reference

Detection of chromosome aberrations in metaphase and interphase tumor cells by in situ hybridization using chromosome-specific library probes

21 January 2018

1 reference

Subdiffraction multicolor imaging of the nuclear periphery with 3D structured illumination microscopy

21 January 2018

1 reference

Interphase chromosomes undergo constrained diffusional motion in living cells

21 January 2018

1 reference

Chromatin in situ proximity (ChrISP): single-cell analysis of chromatin proximities at a high resolution.

21 January 2018

1 reference

Capturing chromosome conformation

21 January 2018

1 reference

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

The long-range interaction landscape of gene promoters

21 January 2018

1 reference

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

21 January 2018

1 reference

Chromosomal domains: epigenetic contexts and functional implications of genomic compartmentalization

21 January 2018

1 reference

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization

21 January 2018

1 reference

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

21 January 2018

1 reference

Chromatin architecture reorganization during stem cell differentiation.

21 January 2018

1 reference

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

21 January 2018

1 reference

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

21 January 2018

1 reference

Topologically associating domains are stable units of replication-timing regulation

21 January 2018

1 reference

21 January 2018

DNA replication timing

1 reference

In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases

21 January 2018

1 reference

Organization of the mitotic chromosome

21 January 2018

1 reference

Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications

21 January 2018

1 reference

Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains

21 January 2018

1 reference

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

21 January 2018

1 reference

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

21 January 2018

1 reference

Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

21 January 2018

1 reference

The DNA methylation landscape of human early embryos.

21 January 2018

1 reference

Intratumor DNA methylation heterogeneity reflects clonal evolution in aggressive prostate cancer.

21 January 2018

1 reference

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

21 January 2018

1 reference

Effect of natural genetic variation on enhancer selection and function.

21 January 2018

1 reference

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

21 January 2018

1 reference

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

21 January 2018

1 reference

Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA

21 January 2018

1 reference

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

21 January 2018

1 reference

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

21 January 2018

1 reference

Single-cell RNA-seq reveals dynamic, random monoallelic gene expression in mammalian cells

21 January 2018

1 reference

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

21 January 2018

1 reference

Quantitative single-cell RNA-seq with unique molecular identifiers

21 January 2018

1 reference

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

21 January 2018

1 reference

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

21 January 2018

1 reference

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

21 January 2018

1 reference

Integrated genome and transcriptome sequencing of the same cell

21 January 2018

1 reference

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

21 January 2018

1 reference

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

21 January 2018

1 reference

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry

21 January 2018

1 reference

Deconstructing transcriptional heterogeneity in pluripotent stem cells

21 January 2018

1 reference

Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging.

21 January 2018

1 reference

ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors.

21 January 2018

1 reference

A microfluidic device for epigenomic profiling using 100 cells.

31 March 2020

1 reference

An uncertainty principle in chromosome positioning

31 March 2020

1 reference

Charting a map through the cellular reprogramming landscape

31 March 2020

1 reference

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NRG3980

1 reference

PubMed ID

26460349

Dimensions Publication ID

2 August 2017

0 references

1 reference

PubMed ID

26460349