(Q35066504)

6 August 2017

title

A repository of assays to quantify 10,000 human proteins by SWATH-MS. (English)

1 reference

6 August 2017

Tiannan Guo

3

0 references

Petri Kouvonen

Petri Kouvonen

5

0 references

George Rosenberger

George Rosenberger

1

0 references

Olga T Schubert

Olga T Schubert

12

0 references

Ben C Collins

Ben C Collins

6

0 references

Hannes L. Röst

Hannes L Röst

4

0 references

Yansheng Liu

Yansheng Liu

8

0 references

Pouya Faridi

Pouya Faridi

13

0 references

Henry Lam

Henry Lam

16

0 references

Ruedi Aebersold

22

Ruedi Aebersold

1 reference

6 August 2017

19

Eric W Deutsch

1 reference

6 August 2017

Stephen Tate

21

0 references

Etienne Caron

9

Etienne Caron

1 reference

6 August 2017

Ching Chiek Koh

2

1 reference

6 August 2017

Moritz Heusel

7

1 reference

6 August 2017

Anton Vichalkovski

10

1 reference

6 August 2017

Marco Faini

11

1 reference

6 August 2017

H Alexander Ebhardt

14

1 reference

6 August 2017

Mariette Matondo

15

1 reference

6 August 2017

Samuel L Bader

17

1 reference

6 August 2017

David S Campbell

18

1 reference

6 August 2017

Robert L Moritz

20

1 reference

6 August 2017

publication date

16 September 2014

1 reference

6 August 2017

1 reference

6 August 2017

volume

1

1 reference

6 August 2017

page(s)

140031

1 reference

Mass-spectrometry-based draft of the human proteome

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A draft map of the human proteome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The strategy, organization, and progress of the HUPO Human Proteome Project

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Mass spectrometric protein maps for biomarker discovery and clinical research

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Protein synthesis rate is the predominant regulator of protein expression during differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Global proteome analysis of the NCI-60 cell line panel

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Comet: an open-source MS/MS sequence database search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Inference and validation of protein identifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Using iRT, a normalized retention time for more targeted measurement of peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A computational tool to detect and avoid redundancy in selected reaction monitoring

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Modification site localization scoring: strategies and performance

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The quantitative proteome of a human cell line.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

UniProt Knowledgebase: a hub of integrated protein data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

mProphet: automated data processing and statistical validation for large-scale SRM experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

8 July 2018

Too many roads not taken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Towards a knowledge-based Human Protein Atlas

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Options and considerations when selecting a quantitative proteomics strategy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Unique ion signature mass spectrometry, a deterministic method to assign peptide identity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

An integrated workflow for charting the human interaction proteome: insights into the PP2A system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Building consensus spectral libraries for peptide identification in proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

In-gel digestion for mass spectrometric characterization of proteins and proteomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Development and validation of a spectral library searching method for peptide identification from MS/MS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Open mass spectrometry search algorithm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Proteomics meets the scientific method.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A first step toward completion of a genome-wide characterization of the human proteome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

Protein sequence databases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4322573

A method for reducing the time required to match protein sequences with tandem mass spectra

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25977788

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Finding the right antibody for the job

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25977788

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The human proteome takes the spotlight

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/SDATA.2014.31

Mass spectrometry mapmaking

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/SDATA.2014.31

The potential clinical impact of the release of two drafts of the human proteome

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1038/SDATA.2014.31

Identifiers

DOI

10.1038/SDATA.2014.31

1 reference

6 August 2017

1 reference

6 August 2017

1 reference