(Q35091081)

6 August 2017

title

Slow protein evolutionary rates are dictated by surface-core association (English)

1 reference

6 August 2017

Agnes Tóth-Petróczy

1

1 reference

6 August 2017

Dan S Tawfik

series ordinal

2

1 reference

6 August 2017

language of work or name

English

0 references

publication date

20 June 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

6 August 2017

published in

1 reference

6 August 2017

volume

108

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6 August 2017

issue

27

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6 August 2017

page(s)

11151-11156

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Pervasive cryptic epistasis in molecular evolution

6 August 2017

cites work

1 reference

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Impact of translational error-induced and error-free misfolding on the rate of protein evolution

8 July 2018

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Mutational effects and the evolution of new protein functions.

8 July 2018

1 reference

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Sequence space and the ongoing expansion of the protein universe

8 July 2018

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Signatures of protein biophysics in coding sequence evolution

8 July 2018

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Gene duplication and the evolution of ribosomal protein gene regulation in yeast

8 July 2018

1 reference

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Comparing models of evolution for ordered and disordered proteins.

8 July 2018

1 reference

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Highly expressed and slowly evolving proteins share compositional properties with thermophilic proteins

8 July 2018

1 reference

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Stability effects of mutations and protein evolvability

8 July 2018

1 reference

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Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins

8 July 2018

1 reference

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The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages

8 July 2018

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Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

8 July 2018

1 reference

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Intense neutral drifts yield robust and evolvable consensus proteins

8 July 2018

1 reference

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Evolution of gene sequence and gene expression are not correlated in yeast.

8 July 2018

1 reference

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Structural mapping of protein interactions reveals differences in evolutionary pressures correlated to mRNA level and protein abundance

8 July 2018

1 reference

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Natural history and evolutionary principles of gene duplication in fungi

8 July 2018

1 reference

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Hot spots--a review of the protein-protein interface determinant amino-acid residues

8 July 2018

1 reference

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The selection of acceptable protein mutations

8 July 2018

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

The stability effects of protein mutations appear to be universally distributed

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

8 July 2018

1 reference

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Protein and DNA sequence determinants of thermophilic adaptation

8 July 2018

1 reference

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Relating three-dimensional structures to protein networks provides evolutionary insights

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Structural determinants of the rate of protein evolution in yeast.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

An integrated view of protein evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Why highly expressed proteins evolve slowly

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Loss of protein structure stability as a major causative factor in monogenic disease.

8 July 2018

1 reference

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Functional genomic analysis of the rates of protein evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Evolutionary rate in the protein interaction network

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Automated analysis of interatomic contacts in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Evolutionary processes and evolutionary noise at the molecular level. I. Functional density in proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

A Simple Definition of Structural Regions in Proteins and Its Use in Analyzing Interface Evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

A single determinant dominates the rate of yeast protein evolution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

A gamma mixture model better accounts for among site rate heterogeneity

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Significant impact of protein dispensability on the instantaneous rate of protein evolution

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Highly expressed genes in yeast evolve slowly.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3131374

Genomic function (communication arising): Rate of evolution and gene dispensability

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1015994108

21 January 2018

Identifiers

DOI

10.1073/PNAS.1015994108

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference