(Q35222522)

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Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae

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Europe PubMed Central

PubMed publication ID

7 August 2017

Phylogenetic signal detection from an ancient rapid radiation: Effects of noise reduction, long-branch attraction, and model selection in crown clade Apocynaceae (English)

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Europe PubMed Central

PubMed publication ID

7 August 2017

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based on heuristic

inferred from title

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Apocynaceae

1 reference

based on heuristic

inferred from title

Pamela S. Soltis

3

object named as

Pamela S Soltis

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Douglas E. Soltis

4

object named as

Douglas E Soltis

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Michael J. Moore

2

object named as

Michael J Moore

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

author name string

Shannon C K Straub

1

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Aaron Liston

5

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Tatyana Livshultz

6

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Europe PubMed Central

PubMed publication ID

7 August 2017

publication date

8 August 2014

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Europe PubMed Central

PubMed publication ID

7 August 2017

Molecular Phylogenetics and Evolution

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Europe PubMed Central

PubMed publication ID

7 August 2017

80

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

169-185

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Plant defense syndromes

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Mutational dynamics of aroid chloroplast genomes

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Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

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A review of long-branch attraction

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7 January 2021

Predictive approaches to assessing the fit of evolutionary models

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Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

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Phylogeny and Historical Biogeography of Lauraceae: Evidence from the Chloroplast and Nuclear Genomes

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Targeted enrichment strategies for next-generation plant biology.

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Migration of endpoints of two genes relative to boundaries between regions of the plastid genome in the grass family (Poaceae).

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Another look at the root of the angiosperms reveals a familiar tale

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A revised classification of the Apocynaceae s.l

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7 January 2021

ADVANCES IN APOCYNACEAE: THE ENLIGHTENMENT, AN INTRODUCTION1

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An updated classification for Apocynaceae

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msatcommander: detection of microsatellite repeat arrays and automated, locus-specific primer design

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Spatiotemporal reconstruction of the Aquilegia rapid radiation through next-generation sequencing of rapidly evolving cpDNA regions.

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Automated removal of noisy data in phylogenomic analyses.

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The Complete Plastid Genome Sequence of Madagascar Periwinkle Catharanthus roseus (L.) G. Don: Plastid Genome Evolution, Molecular Marker Identification, and Phylogenetic Implications in Asterids

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Inconsistency of phylogenetic estimates from concatenated data under coalescence

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AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

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PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

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A functional phylogenomic view of the seed plants

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7 January 2021

Vessel grouping patterns in subfamilies Apocynoideae and Periplocoideae confirm phylogenetic value of wood structure within Apocynaceae

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Coalescent methods for estimating phylogenetic trees

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A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

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7 January 2021

Climate niches of milkweeds with plesiomorphic traits (Secamonoideae; Apocynaceae) and the milkweed sister group link ancient African climates and floral evolution

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Natural products in cancer chemotherapy: past, present and future

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Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

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Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences

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7 January 2021

Phylogenomic analysis of transcriptome data elucidates co-occurrence of a paleopolyploid event and the origin of bimodal karyotypes in Agavoideae (Asparagaceae).

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7 January 2021

Streptoechites gen. nov., a new genus of Asian Apocynaceae

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7 January 2021

Rapid and accurate pyrosequencing of angiosperm plastid genomes

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Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

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Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

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Microevolutionary processes generate phylogenomic discordance at ancient divergences

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Do Menabea venenata and Secamonopsis madagascariensis Represent Missing Links between Periplocaceae, Secamonoideae and Marsdenieae (Asclepiadaceae)?

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Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

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Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

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Heterotachy and long-branch attraction in phylogenetics

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Selecting the best-fit model of nucleotide substitution.

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Ancient origin of lactalbumin from lysozyme: analysis of DNA and amino acid sequences

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Taxonomy ""under construction"": advances in the systematics of Apocynaceae, with emphasis on the Brazilian Asclepiadoideae

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Bushes in the tree of life

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Animal evolution and the molecular signature of radiations compressed in time

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Potential functional replacement of the plastidic acetyl-CoA carboxylase subunit (accD) gene by recent transfers to the nucleus in some angiosperm lineages.

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Primer3 on the WWW for general users and for biologist programmers

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Detection of phytochrome-like genes from Rhazya stricta (Apocynaceae) using de novo genome assembly.

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Inferring ancient divergences requires genes with strong phylogenetic signals.

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10.1016/J.YMPEV.2014.07.020

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

ResearchGate publication ID

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