(Q45347312)

English

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

scientific article published on 12 December 2013

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

13 December 2017

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates (English)

1 reference

Europe PubMed Central

13 December 2017

object named as

Geraniaceae

1 reference

based on heuristic

inferred from title

author name string

Mao-Lun Weng

1

1 reference

Europe PubMed Central

13 December 2017

John C Blazier

2

1 reference

Europe PubMed Central

13 December 2017

Madhumita Govindu

3

1 reference

Europe PubMed Central

13 December 2017

Robert K Jansen

4

1 reference

Europe PubMed Central

13 December 2017

publication date

12 December 2013

1 reference

Europe PubMed Central

13 December 2017

Molecular Biology and Evolution

1 reference

Europe PubMed Central

13 December 2017

31

1 reference

Europe PubMed Central

13 December 2017

3

1 reference

Europe PubMed Central

13 December 2017

645-659

1 reference

Europe PubMed Central

13 December 2017

Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

CREx: inferring genomic rearrangements based on common intervals.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The Complete Chloroplast Genome Sequence of Pelargonium x hortorum: Organization and Evolution of the Largest and Most Highly Rearranged Chloroplast Genome of Land Plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

jModelTest 2: more models, new heuristics and parallel computing

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Bayesian phylogenetics with BEAUti and the BEAST 1.7

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Whole-gene positive selection, elevated synonymous substitution rates, duplication, and indel evolution of the chloroplast clpP1 gene

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Positive selection and subfunctionalization of duplicated CCT chaperonin subunits.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Phylogeny and Historical Biogeography of Geraniaceae in Relation to Climate Changes and Pollination Ecology

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

DNA mismatch repair and genetic instability

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Complete nucleotide sequence of the Cryptomeria japonica D. Don. chloroplast genome and comparative chloroplast genomics: diversified genomic structure of coniferous species

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Methods for obtaining and analyzing whole chloroplast genome sequences.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Localized hypermutation and associated gene losses in legume chloroplast genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Recombination and the maintenance of plant organelle genome stability.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Plastid ndh genes in plant evolution

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

First Miocene fossils of Vivianiaceae shed new light on phylogeny, divergence times, and historical biogeography of Geraniales

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Tobacco plastid ribosomal protein S18 is essential for cell survival

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Potential functional replacement of the plastidic acetyl-CoA carboxylase subunit (accD) gene by recent transfers to the nucleus in some angiosperm lineages.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The plastid genomes of flowering plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence in the angiosperm genus Silene.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

GRIMM: genome rearrangements web server

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae).

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The evolution of chloroplast genes and genomes in ferns.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Automatic annotation of organellar genomes with DOGMA

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

The relationship between the rate of molecular evolution and the rate of genome rearrangement in animal mitochondrial genomes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

PAML 4: phylogenetic analysis by maximum likelihood

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Why does biparental plastid inheritance revive in angiosperms?

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST257

21 January 2018

Identifiers

10.1093/MOLBEV/MST257

1 reference

Europe PubMed Central

13 December 2017

1 reference

Europe PubMed Central

13 December 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q45347312&oldid=2075462658"