Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35968838)
Watch
English
Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
title
Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
author
Federico Gaiti
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Selene L Fernandez-Valverde
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Andrew Calcino
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Itai Yanai
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Milos Tanurdzic
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Bernard Degnan
series ordinal
7
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
author name string
Nagayasu Nakanishi
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
publication date
14 May 2015
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
published in
Molecular Biology and Evolution
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
volume
32
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
issue
9
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
page(s)
2367-2382
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
cites work
Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A micropeptide encoded by a putative long noncoding RNA regulates muscle performance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
HTSeq--a Python framework to work with high-throughput sequencing data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long non-coding RNAs as a source of new peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The ctenophore genome and the evolutionary origins of neural systems
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A customized Web portal for the genome of the ctenophore Mnemiopsis leidyi.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Species-specific alternative splicing leads to unique expression of sno-lncRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Everything old is new again: (linc)RNAs make proteins!
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Trimmomatic: a flexible trimmer for Illumina sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Evolutionary origin of gastrulation: insights from sponge development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Diversity and dynamics of the Drosophila transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Cnidarian microRNAs frequently regulate targets by cleavage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome-wide discovery and characterization of maize long non-coding RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome-wide identification and functional annotation of Plasmodium falciparum long noncoding RNAs from RNA-seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The analysis of eight transcriptomes from all poriferan classes reveals surprising genetic complexity in sponges
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The evolution of lncRNA repertoires and expression patterns in tetrapods
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Toddler: an embryonic signal that promotes cell movement via Apelin receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The genome of the ctenophore Mnemiopsis leidyi and its implications for cell type evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs promote transcriptional poising of inducible genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The evolution of microRNA pathway protein components in Cnidaria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Widespread purifying selection on RNA structure in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
lincRNAs: genomics, evolution, and mechanisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A meta-analysis of the genomic and transcriptomic composition of complex life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A NGS approach to the encrusting Mediterranean sponge Crella elegans (Porifera, Demospongiae, Poecilosclerida): transcriptome sequencing, characterization and overview of the gene expression along three life cycle stages.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Peptidomic discovery of short open reading frame-encoded peptides in human cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Evolutionary conservation and functional roles of ncRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs with snoRNA ends
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Landscape of transcription in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Computational identification and functional predictions of long noncoding RNA in Zea mays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Rapid turnover of long noncoding RNAs and the evolution of gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs in C. elegans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome regulation by long noncoding RNAs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Modular regulatory principles of large non-coding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Decapping of long noncoding RNAs regulates inducible genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The Cambrian conundrum: early divergence and later ecological success in the early history of animals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
SignalP 4.0: discriminating signal peptides from transmembrane regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Molecular mechanisms of long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
lincRNAs act in the circuitry controlling pluripotency and differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
HMMER web server: interactive sequence similarity searching
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The central role of RNA in human development and cognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Non-coding RNAs as regulators of embryogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs with enhancer-like function in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The Amphimedon queenslandica genome and the evolution of animal complexity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNA as modular scaffold of histone modification complexes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
A coding-independent function of gene and pseudogene mRNAs regulates tumour biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The long noncoding RNA RNCR2 directs mouse retinal cell specification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
2-D structure of the A region of Xist RNA and its implication for PRC2 association
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs: functional surprises from the RNA world
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The genetic signatures of noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Evolution and functions of long noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long non-coding RNAs: insights into functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
MicroRNAs: target recognition and regulatory functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The Trichoplax genome and the nature of placozoans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The Eukaryotic Genome as an RNA Machine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Specific expression of long noncoding RNAs in the mouse brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The expanding RNA polymerase III transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
RNA maps reveal new RNA classes and a possible function for pervasive transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Non-coding RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
The transcriptional landscape of the mammalian genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
An expanding universe of noncoding RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
BLAT—The BLAST-Like Alignment Tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Non–coding RNA genes and the modern RNA world
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
EMBOSS: the European Molecular Biology Open Software Suite
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
2 October 2017
Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
11 July 2018
Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
11 July 2018
BLIND ordering of large-scale transcriptomic developmental timecourses.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
24 September 2018
Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
24 September 2018
Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
24 September 2018
The relationship between non-protein-coding DNA and eukaryotic complexity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4540969
retrieved
24 September 2018
Neutral evolution of ‘non-coding’ complementary DNAs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSV117
retrieved
21 January 2018
Isolation of Amphimedon Developmental Material
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25976353
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25976353
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/MOLBEV/MSV117
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Fatcat ID
release_zyfv7kpganbfpcza6adl7gbtzy
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/zyfv7kpganbfpcza6adl7gbtzy
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMCID
4540969
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
PubMed ID
25976353
1 reference
stated in
Europe PubMed Central
PMCID
4540969
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25976353%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
ResearchGate publication ID
276278643
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit