(Q36044370)

11 August 2017

Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences (English)

1 reference

11 August 2017

1 reference

3

Agnelo Furtado

1 reference

11 August 2017

Marta Brozynska

2

0 references

Daniel Waters

object named as

Daniel L Waters

series ordinal

4

0 references

Robert J. Henry

object named as

Robert J Henry

series ordinal

5

0 references

author name string

Peterson W Wambugu

series ordinal

1

1 reference

PMCID

4564799

11 August 2017

language of work or name

English

0 references

publication date

10 September 2015

1 reference

11 August 2017

1 reference

11 August 2017

5

1 reference

11 August 2017

13957

1 reference

Creative Commons Attribution 4.0 International

11 August 2017

start time

10 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/srep13957

0 references

cites work

Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Chloroplast Genome of Novel Rice Germplasm Identified in Northern Australia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

BEAST 2: a software platform for Bayesian evolutionary analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Sequencing of chloroplast genomes from wheat, barley, rye and their relatives provides a detailed insight into the evolution of the Triticeae tribe

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Conservation and utilization of African Oryza genetic resources.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Molecular relationships between Australian annual wild rice, Oryza meridionalis, and two related perennial forms.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

A map of rice genome variation reveals the origin of cultivated rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Rate variation and estimation of divergence times using strict and relaxed clocks

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Molecular evidence for a single evolutionary origin of domesticated rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Analysis of 142 genes resolves the rapid diversification of the rice genus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Convergent evolution of gigantism in damselflies of Africa and South America? Evidence from nuclear and mitochondrial sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Rapid recent growth and divergence of rice nuclear genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

MrBayes 3: Bayesian phylogenetic inference under mixed models

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Apollo: a sequence annotation editor

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

RAPD, RFLP and SSLP analyses of phylogenetic relationships between cultivated and wild species of rice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Early Cretaceous lineages of monocot flowering plants

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Phylogeny of rice genomes with emphasis on origins of allotetraploid species

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

MODELTEST: testing the model of DNA substitution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

A molecular timescale for vertebrate evolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Germinal transpositions of the maize element Dissociation from T-DNA loci in tomato

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Geographic and phylogenetic patterns in Silene section Melandrium (Caryophyllaceae) as inferred from chloroplast and nuclear DNA sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Chloroplast genome sequences from total DNA for plant identification.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Ancient Vicariance or Recent Long‐Distance Dispersal? Inferences about Phylogeny and South American–African Disjunctions in Rapateaceae and Bromeliaceae Based on ndhF Sequence Data

23 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP13957

Evidence of chloroplast capture in South American Nothofagus (subgenus Nothofagus, Nothofagaceae)

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4564799

Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza

21 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP13957

How should gaps be treated in parsimony? A comparison of approaches using simulation

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP13957

Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes

21 January 2018

1 reference

12 December 2020

Evolutionary relationships among rice species with AA genome based on SINE insertion analysis

1 reference

12 December 2020

Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA

1 reference

12 December 2020

Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences

1 reference

12 December 2020

Identifiers

DOI

10.1038/SREP13957

1 reference

11 August 2017

1 reference

11 August 2017

1 reference

PMCID

4564799