(Q36320205)

13 June 2018

title

Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data. (English)

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13 June 2018

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2

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13 June 2018

author name string

Aaron T L Lun

series ordinal

1

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13 June 2018

publication date

1 July 2017

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13 June 2018

published in

Biostatistics

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13 June 2018

volume

18

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13 June 2018

issue

3

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13 June 2018

page(s)

451-464

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13 June 2018

describes a project that uses

DESeq2

object named as

DESeq2

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

ROBUST HYPERPARAMETER ESTIMATION PROTECTS AGAINST HYPERVARIABLE GENES AND IMPROVES POWER TO DETECT DIFFERENTIAL EXPRESSION.

1 reference

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Batch effects and the effective design of single-cell gene expression studies

29 June 2018

1 reference

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A statistical approach for identifying differential distributions in single-cell RNA-seq experiments

29 June 2018

1 reference

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Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

29 June 2018

1 reference

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Beyond comparisons of means: understanding changes in gene expression at the single-cell level

29 June 2018

1 reference

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29 June 2018

1 reference

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Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

29 June 2018

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Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

29 June 2018

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29 June 2018

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Computational and analytical challenges in single-cell transcriptomics

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29 June 2018

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29 June 2018

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Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

29 June 2018

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29 June 2018

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

29 June 2018

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29 June 2018

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29 June 2018

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Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates

29 June 2018

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29 June 2018

1 reference

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29 June 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

29 June 2018

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29 June 2018

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Use of within-array replicate spots for assessing differential expression in microarray experiments.

29 June 2018

1 reference

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10.1093/BIOSTATISTICS/KXW055

22 September 2018

Identifiers

DOI

1 reference

13 June 2018

PMC publication ID

5862359

1 reference

13 June 2018

PubMed publication ID

28334062

1 reference

13 June 2018