(Q37055842)

18 August 2017

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title

Integrated approaches to uncovering transcription regulatory networks in mammalian cells (English)

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18 August 2017

Timothy Ravasi

3

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Jesper Tegnér

series ordinal

2

object named as

Jesper Tegner

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18 August 2017

Kai Tan

1

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18 August 2017

publication date

8 January 2008

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18 August 2017

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18 August 2017

volume

91

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18 August 2017

issue

3

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18 August 2017

page(s)

219-231

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The Sequence of the Human Genome

18 August 2017

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Microarray analysis and tumor classification

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

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Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy

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Transcriptional network dynamics in macrophage activation

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7 January 2021

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Transcript abundance in yeast varies over six orders of magnitude

7 January 2021

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Stimulus-specific assembly of enhancer complexes on the tumor necrosis factor alpha gene promoter

7 January 2021

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The mechanism of transcriptional synergy of an in vitro assembled interferon-beta enhanceosome

7 January 2021

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7 January 2021

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Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?

7 January 2021

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7 January 2021

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7 January 2021

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Analysis of proteins and proteomes by mass spectrometry

7 January 2021

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Large-scale protein identification using mass spectrometry

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Global analysis of protein expression in yeast

7 January 2021

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Transcriptional regulatory code of a eukaryotic genome

7 January 2021

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Transcriptional regulatory networks in Saccharomyces cerevisiae

7 January 2021

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Mammalian cell expression

7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Genomic strategies to identify mammalian regulatory sequences

7 January 2021

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Exploiting human--fish genome comparisons for deciphering gene regulation

7 January 2021

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Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

7 January 2021

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Highly conserved non-coding sequences are associated with vertebrate development

7 January 2021

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Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

7 January 2021

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Close sequence comparisons are sufficient to identify human cis-regulatory elements.

7 January 2021

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Distribution and intensity of constraint in mammalian genomic sequence

7 January 2021

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A model of the statistical power of comparative genome sequence analysis

7 January 2021

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An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

7 January 2021

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

7 January 2021

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Integrating regulatory motif discovery and genome-wide expression analysis

7 January 2021

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A boosting approach for motif modeling using ChIP-chip data

7 January 2021

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BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments

7 January 2021

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Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Extensive low-affinity transcriptional interactions in the yeast genome

7 January 2021

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Genomic analysis of regulatory network dynamics reveals large topological changes

7 January 2021

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CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling

7 January 2021

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Identification of regulatory regions which confer muscle-specific gene expression.

7 January 2021

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A genetic algorithm for the detection of new cis-regulatory modules in sets of coregulated genes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

A Discriminative Model for Identifying Spatial cis-Regulatory Modules

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Decoding human regulatory circuits

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

De novo cis-regulatory module elicitation for eukaryotic genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.

7 January 2021

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Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

A probabilistic method to detect regulatory modules.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

MSCAN: identification of functional clusters of transcription factor binding sites

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

7 January 2021

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Computational discovery of gene modules and regulatory networks

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

7 January 2021

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Network component analysis: reconstruction of regulatory signals in biological systems

7 January 2021

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Transcriptional regulation of protein complexes in yeast

7 January 2021

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Transcriptional regulation of protein complexes within and across species

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Dynamic Complex Formation During the Yeast Cell Cycle

7 January 2021

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Discovering regulatory and signalling circuits in molecular interaction networks

7 January 2021

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7 January 2021

Physical network models.

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A gene atlas of the mouse and human protein-encoding transcriptomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Integrative molecular concept modeling of prostate cancer progression.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

From signatures to models: understanding cancer using microarrays

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

7 January 2021

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A network-based analysis of systemic inflammation in humans

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Global reconstruction of the human metabolic network based on genomic and bibliomic data

7 January 2021

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Toward predictive models of mammalian cells

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

A network-based analysis of allergen-challenged CD4+ T cells from patients with allergic rhinitis.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

A high-density SNP genome-wide linkage search of 206 families identifies susceptibility loci for chronic lymphocytic leukemia

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2007.11.005

10.1016/J.YGENO.2007.11.005

7 January 2021

Identifiers

DOI

1 reference

18 August 2017

1 reference