(Q37228058)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

review article

1 reference

title

Identification of replication origins in prokaryotic genomes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

1

Natalia V Sernova

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

publication date

26 July 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

11 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

volume

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

page(s)

376-391

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes

11 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Genome organization in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Multiple origins of replication in archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Common structural features of replication origins in all life forms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Mutational bias suggests that replication termination occurs near the dif site, not at Ter sites: what's the Dif?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

DNA replication in the archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Separation of B. subtilis DNA into complementary strands. 3. Direct analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

From GC skews to wavelets: a gentle guide to the analysis of compositional asymmetries in genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Ongoing evolution of strand composition in bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The replication-related organization of bacterial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Gene essentiality determines chromosome organisation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

A new method for assessing the effect of replication on DNA base composition asymmetry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

How genomes rearrange: genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Diverse genome structures of Salmonella paratyphi C.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Complete Genome Sequence of Rickettsia typhi and Comparison with Sequences of Other Rickettsiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Molecular Characterization of Brucella abortus Chromosome II Recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Genome reduction in Leptospira borgpetersenii reflects limited transmission potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Genome sequence of Yersinia pestis, the causative agent of plague

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Archaea: an archetype for replication initiation studies?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The orientation bias of Chi sequences is a general tendency of G-rich oligomers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Skewed oligomers and origins of replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Selection for chromosome architecture in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Validating the significance of genomic properties of Chi sites from the distribution of all octamers in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Correlation of chi orientation with transcription indicates a fundamental relationship between recombination and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Asymmetric substitution patterns in the two DNA strands of bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The complete genome sequence of Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Replication orientation affects the rate and direction of bacterial gene evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Origin of replication in circular prokaryotic chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Regulation of the initiation of chromosomal replication in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

DNA replication initiation: mechanisms and regulation in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Regulatory network of the initiation of chromosomal replication in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin, oriC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Identification of the chromosomal replication origin from Thermus thermophilus and its interaction with the replication initiator DnaA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

DNA binding specificity of the replication initiator protein, DnaA from Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The intrinsic ATPase activity of Mycobacterium tuberculosis DnaA promotes rapid oligomerization of DnaA on oriC

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Distribution of stable DnaA-binding sites on the Bacillus subtilis genome detected using a modified ChIP-chip method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Structural basis of replication origin recognition by the DnaA protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Where does bacterial replication start? Rules for predicting the oriC region

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

DoriC: a database of oriC regions in bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The obligate human pathogen, Neisseria gonorrhoeae, is polyploid

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Cloning and characterization of an autonomous replication sequence from Coxiella burnetii

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Cell-cycle control of a cloned chromosomal origin of replication from Caulobacter crescentus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Analyzing genomes with cumulative skew diagrams

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Oriloc: prediction of replication boundaries in unannotated bacterial chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Comparative Genometrics (CG): a database dedicated to biometric comparisons of whole genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Analysis of distribution of bases in the coding sequences by a diagrammatic technique

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Z curves, an intutive tool for visualizing and analyzing the DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Recognition of regulatory sites by genomic comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

WWW-query: an on-line retrieval system for biological sequence banks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Identification of replication origins in archaeal genomes based on the Z-curve method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Wavelet to predict bacterial ori and ter: a tendency towards a physical balance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Genetic and physical mapping of DNA replication origins in Haloferax volcanii

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Organization of the origins of replication of the chromosomes of Mycobacterium smegmatis, Mycobacterium leprae and Mycobacterium tuberculosis and isolation of a functional origin from M. smegmatis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Limiting DNA replication to once and only once

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

The datA locus predominantly contributes to the initiator titration mechanism in the control of replication initiation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Conserved gene arrangement in the origin region of the Streptomyces coelicolor chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Minimal requirements of the Streptomyces lividans 66 oriC region and its transcriptional and translational activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Structural elements of the Streptomyces oriC region and their interactions with the DnaA protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

Mutations in the CCGTTCACA DnaA box of Mycobacterium tuberculosis oriC that abolish replication of oriC plasmids are tolerated on the chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBN031

21 January 2018

Identifiers

DOI

10.1093/BIB/BBN031

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18660512%20AND%20SRC:MED&resulttype=core&format=json

11 January 2020

DBLP publication ID

journals/bib/SernovaG08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference