(Q37261842)

English

CpG methylation analysis--current status of clinical assays and potential applications in molecular diagnostics: a report of the Association for Molecular Pathology.

scientific article published on 18 June 2009

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31 January 2020

CpG methylation analysis--current status of clinical assays and potential applications in molecular diagnostics: a report of the Association for Molecular Pathology (English)

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Antonia R Sepulveda

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Dan Jones

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Wade Samowitz

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Margaret L Gulley

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Robin Edwards

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Victor Levenson

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Victoria M Pratt

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Bin Yang

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Liying Yan

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Patrick Vitazka

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The Journal of Molecular Diagnostics

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31 January 2020

CpG island methylator phenotype (CIMP) in cancer: causes and implications

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18q loss of heterozygosity in microsatellite stable colorectal cancer is correlated with CpG island methylator phenotype-negative (CIMP-0) and inversely with CIMP-low and CIMP-high.

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Molecular correlates with MGMT promoter methylation and silencing support CpG island methylator phenotype-low (CIMP-low) in colorectal cancer.

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CpG island methylator phenotype-low (CIMP-low) in colorectal cancer: possible associations with male sex and KRAS mutations

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CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer

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Microarray-based DNA methylation profiling: technology and applications

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CpG island methylator phenotype (CIMP) of colorectal cancer is best characterised by quantitative DNA methylation analysis and prospective cohort studies

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Epigenetic silencing of the MGMT gene in cancer.

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A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

6 September 2017

DNA methylation paradigm shift: 15-lipoxygenase-1 upregulation in prostatic intraepithelial neoplasia and prostate cancer by atypical promoter hypermethylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

In situ bisulfite modification of membrane-immobilized DNA for multiple methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Demonstration and characterization of mutations induced by Helicobacter pylori organisms in gastric epithelial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Aberrant methylation of secreted apoptosis-related protein 2 (SARP2) in pure pancreatic juice in diagnosis of pancreatic neoplasms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Microarray analysis of promoter methylation in lung cancers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Epigenetic regulation of O6-methylguanine-DNA methyltransferase gene expression by histone acetylation and methyl-CpG binding proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

MethylQuant: a sensitive method for quantifying methylation of specific cytosines within the genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

The EBV lytic switch protein, Z, preferentially binds to and activates the methylated viral genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

A novel real-time PCR assay for quantitative analysis of methylated alleles (QAMA): analysis of the retinoblastoma locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Clinical trial substantiates the predictive value of O-6-methylguanine-DNA methyltransferase promoter methylation in glioblastoma patients treated with temozolomide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

A real-time PCR assay for DNA-methylation using methylation-specific blockers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

DNA methylation at a CCGG sequence in the large intron of the rabbit beta-globin gene: tissue-specific variations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

14 September 2017

Expression of human histo-blood group ABO genes is dependent upon DNA methylation of the promoter region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

28 September 2017

Identification of differentially methylated sequences in colorectal cancer by methylated CpG island amplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

28 September 2017

Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

28 September 2017

Optimization of quantitative MGMT promoter methylation analysis using pyrosequencing and combined bisulfite restriction analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

The CpG island methylator phenotype and chromosomal instability are inversely correlated in sporadic colorectal cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

Distinct patterns of KRAS mutations in colorectal carcinomas according to germline mismatch repair defects and hMLH1 methylation status

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

Promoter methylation of E-cadherin gene in gastric mucosa associated with Helicobacter pylori infection and in gastric cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

CpG island hypermethylation in human colorectal tumors is not associated with DNA methyltransferase overexpression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

Effect of 5-azacytidine on expression of the human DNA repair enzyme O6-methylguanine-DNA methyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

26 June 2018

CpG island methylator phenotype-low (CIMP-low) colorectal cancer shows not only few methylated CIMP-high-specific CpG islands, but also low-level methylation at individual loci

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

APC mutations and other genetic and epigenetic changes in colon cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Detection of aberrant methylation of four genes in plasma DNA for the detection of breast cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Association of JC virus T-antigen expression with the methylator phenotype in sporadic colorectal cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Loss of O6-methylguanine-DNA methyltransferase protein expression is a favorable prognostic marker in diffuse large B-cell lymphoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Quantitative multiplex methylation-specific PCR analysis doubles detection of tumor cells in breast ductal fluid

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Prognostic DNA methylation biomarkers in ovarian cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

High levels of aberrant DNA methylation in Helicobacter pylori-infected gastric mucosae and its possible association with gastric cancer risk.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Quantitative detection of promoter hypermethylation in multiple genes in the serum of patients with colorectal cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Evaluation of a large, population-based sample supports a CpG island methylator phenotype in colon cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Characterization of DNA demethylation effects induced by 5-Aza-2'-deoxycytidine in patients with myelodysplastic syndrome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Preoperative serum DNA GSTP1 CpG island hypermethylation and the risk of early prostate-specific antigen recurrence following radical prostatectomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Detection of hypermethylated genes in women with and without cervical neoplasia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Analysis of promoter methylation in stool: a novel method for the detection of colorectal cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Use of DNA from human stools to detect aberrant CpG island methylation of genes implicated in colorectal cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Promoter hypermethylation frequency and BRAF mutations distinguish hereditary non-polyposis colon cancer from sporadic MSI-H colon cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

CpG island hypermethylation of the DNA repair enzyme methyltransferase predicts response to temozolomide in primary gliomas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Detection of breast cancer in nipple aspirate fluid by CpG island hypermethylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Detection of gene promoter hypermethylation in fine needle washings from breast lesions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Promoter Hypermethylation of the DNA Repair Gene O6‐Methylguanine‐DNA Methyltransferase is an Independent Predictor of Shortened Progression Free Survival in Patients with Low‐grade Diffuse Astrocytomas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

CpG island methylation in sporadic colorectal cancers and its relationship to microsatellite instability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Inactivation of O6-methylguanine-DNA methyltransferase in human lung adenocarcinoma relates to high-grade histology and worse prognosis among smokers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Expression and prognostic significance of O6-methylguanine-DNA methyltransferase in hepatocellular, gastric, and breast cancers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Promoter hypermethylation of the DNA repair gene O(6)-methylguanine-DNA methyltransferase is associated with the presence of G:C to A:T transition mutations in p53 in human colorectal tumorigenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Ubiquitous presence of O6-methylguanine in human peripheral and cord blood DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Identification and characterization of differentially methylated regions of genomic DNA by methylation-sensitive arbitrarily primed PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Identification of Grf1 on mouse chromosome 9 as an imprinted gene by RLGS-M.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Pharmacodynamic and DNA methylation studies of high-dose 1-beta-D-arabinofuranosyl cytosine before and after in vivo 5-azacytidine treatment in pediatric patients with refractory acute lymphocytic leukemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

3 September 2018

Inheritance of a Cancer-AssociatedMLH1Germ-Line Epimutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

20 October 2018

Adverse Prognostic Effect of Methylation in Colorectal Cancer Is Reversed by Microsatellite Instability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2710701

20 October 2018

Towards Clinical Application of Methylated DNA Sequences as Cancer Biomarkers: A Joint NCI's EDRN and NIST Workshop on Standards, Methods, Assays, Reagents and Tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estrogen receptor gene methylation in human breast tumors

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between DNA methylation and expression of O6-methylguanine-DNA methyltransferase gene in cultured human tumor cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Examination of DNA methylation of chromosomal hot spots associated with breast cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methylation of the estrogen receptor gene CpG island marks loss of estrogen receptor expression in human breast cancer cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation status of the MUC1 gene coding for a breast-cancer-associated protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inactivation of the CDKN2/p16/MTS1 gene is frequently associated with aberrant DNA methylation in all common human cancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silencing of the mammary-derived growth inhibitor (MDGI) gene in breast neoplasms is associated with epigenetic changes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hypermethylation of calcitonin gene regulatory sequences in human breast cancer as revealed by genomic sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hypermethylation of the p16INK4a promoter in colectomy specimens of patients with long-standing and extensive ulcerative colitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA adducts in humans after exposure to methylating agents

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methylation of estrogen and progesterone receptor gene 5' CpG islands correlates with lack of estrogen and progesterone receptor gene expression in breast tumors

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methylation profiling of CpG islands in human breast cancer cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Promoter methylation profiles of tumor suppressor genes in intrahepatic and extrahepatic cholangiocarcinoma

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct hypermethylation profile of primary breast cancer is associated with sentinel lymph node metastasis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Poor Survival Associated with theBRAFV600E Mutation in Microsatellite-Stable Colon Cancers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prognostic DNA methylation marker in serum of cancer patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation profiling of cervical squamous intraepithelial lesions using liquid-based cytology specimens: an approach that utilizes receiver-operating characteristic analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CpG island arrays: an application toward deciphering epigenetic signatures of breast cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of aberrantly methylated hMLH1 promoter DNA in the serum of patients with microsatellite unstable colon cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Detection of breast cancer cells in ductal lavage fluid by methylation-specific PCR

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence of tumor DNA in plasma of breast cancer patients after mastectomy

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Use of CpG island microarrays to identify colorectal tumors with a high degree of concurrent methylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Morphological and molecular heterogeneity within nonmicrosatellite instability-high colorectal cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA methylation in serum of breast cancer patients: an independent prognostic marker

1 reference

https://pubmed.ncbi.nlm.nih.gov/19541921

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.2353/JMOLDX.2009.080125

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19541921%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19541921%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19541921%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

ResearchGate publication ID

0 references

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