(Q37283636)

19 August 2017

MicroRNA target site identification by integrating sequence and binding information (English)

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19 August 2017

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3

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19 August 2017

5

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19 August 2017

7

Uwe Ohler

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19 August 2017

6

Bryan R Cullen

1 reference

19 August 2017

4

Rebecca L Skalsky

1 reference

19 August 2017

William H Majoros

1

1 reference

PMCID

3818907

19 August 2017

Parawee Lekprasert

series ordinal

2

1 reference

19 August 2017

26 May 2013

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19 August 2017

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19 August 2017

10

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19 August 2017

7

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19 August 2017

630-633

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https://scigraph.springernature.com/pub.10.1038/nmeth.2489

19 August 2017

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cites work

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

An alternative mode of microRNA target recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

The viral and cellular microRNA targetome in lymphoblastoid cell lines

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

The members of an Epstein-Barr virus microRNA cluster cooperate to transform B lymphocytes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Assessing the utility of thermodynamic features for microRNA target prediction under relaxed seed and no conservation requirements

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Expanding the microRNA targeting code: functional sites with centered pairing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

MicroRNAs: target recognition and regulatory functions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Most mammalian mRNAs are conserved targets of microRNAs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

miR2Disease: a manually curated database for microRNA deregulation in human disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Principles of microRNA-target recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3818907

Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.2489

21 January 2018

Identifiers

DOI

10.1038/NMETH.2489

1 reference

19 August 2017

1 reference

19 August 2017

1 reference

PMCID

3818907