(Q37461649)

20 August 2017

1 reference

title

Constraint counting on RNA structures: linking flexibility and function (English)

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20 August 2017

0 references

1

Simone Fulle

1 reference

20 August 2017

Holger Gohlke

2

1 reference

20 August 2017

4 May 2009

1 reference

20 August 2017

1 reference

20 August 2017

49

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20 August 2017

2

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20 August 2017

181-188

1 reference

RNA dynamics: it is about time.

20 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Molecular dynamics studies of the HIV-1 TAR and its complex with argininamide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The relative flexibility of B-DNA and A-RNA duplexes: database analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Molecular dynamics simulations of biomolecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Recent advances in the study of nucleic acid flexibility by molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Molecular dynamics simulations of RNA: an in silico single molecule approach.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Global ribosome motions revealed with elastic network model.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Exploring global motions and correlations in the ribosome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

A ratchet-like inter-subunit reorganization of the ribosome during translocation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Multiscale modeling of nucleic acids: insights into DNA flexibility

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Comparison of mode analyses at different resolutions applied to nucleic acid systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Anisotropy of fluctuation dynamics of proteins with an elastic network model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Anisotropic network model: systematic evaluation and a new web interface.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

oGNM: online computation of structural dynamics using the Gaussian Network Model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Revealing unique properties of the ribosome using a network based analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Analyzing the flexibility of RNA structures by constraint counting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Protein flexibility predictions using graph theory

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Constrained geometric simulation of diffusive motion in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Protein unfolding: rigidity lost

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

A guide to ions and RNA structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

A natural coarse graining for simulating large biomolecular motion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Resolving the motional modes that code for RNA adaptation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Identifying protein folding cores from the evolution of flexible regions during unfolding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Size, shape, and flexibility of RNA structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Water and ion binding around RNA and DNA (C,G) oligomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Nucleic acid solvation: from outside to insight.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Molecular dynamics simulations of solvated yeast tRNA(Asp).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

A molecular dynamics simulation study of an aminoglycoside/A-site RNA complex: conformational and hydration patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

An optimized potential function for the calculation of nucleic acid interaction energies I. base stacking

7 January 2021

2 references

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

7 January 2021

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

inferred from DOI database lookup

7 January 2021

based on heuristic

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The ribosomal exit tunnel functions as a discriminating gate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Structural insight into the role of the ribosomal tunnel in cellular regulation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Three-dimensional structures of translating ribosomes by Cryo-EM.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The structural basis of ribosome activity in peptide bond synthesis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The Geometry of the Ribosomal Polypeptide Exit Tunnel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The Structural Basis of Large Ribosomal Subunit Function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Folding zones inside the ribosomal exit tunnel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Structures of five antibiotics bound at the peptidyl transferase center of the large ribosomal subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Ribosomal antibiotics: structural basis for resistance, synergism and selectivity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Chloramphenicol resistance mutations in the single 23S rRNA gene of the archaeon Halobacterium halobium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

The structures of four macrolide antibiotics bound to the large ribosomal subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Mutations Outside the Anisomycin-Binding Site Can Make Ribosomes Drug-Resistant

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Regulatory nascent peptides in the ribosomal tunnel

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Translation arrest requires two-way communication between a nascent polypeptide and the ribosome.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

Conformational dynamics of RNA-peptide binding: a molecular dynamics simulation study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2009.04.004

10.1016/J.YMETH.2009.04.004

7 January 2021

Identifiers

DOI

1 reference

20 August 2017

1 reference

PubMed ID

19398009