(Q37919798)

25 August 2017

1 reference

title

Finding aptamers and small ribozymes in unexpected places (English)

1 reference

25 August 2017

0 references

Katarzyna Matylla-Kulinska

1

1 reference

25 August 2017

Jennifer L Boots

2

1 reference

25 August 2017

Bob Zimmermann

3

1 reference

25 August 2017

Renée Schroeder

4

1 reference

25 August 2017

publication date

18 August 2011

1 reference

Wiley interdisciplinary reviews. RNA

25 August 2017

published in

1 reference

25 August 2017

volume

3

1 reference

25 August 2017

issue

1

1 reference

25 August 2017

page(s)

73-91

1 reference

ENCODE whole-genome data in the UCSC genome browser (2011 update)

25 August 2017

cites work

1 reference

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

21 January 2018

1 reference

The chemical repertoire of natural ribozymes

21 January 2018

1 reference

Artificial ribozymes and deoxyribozymes

21 January 2018

1 reference

Controlling gene expression in living cells through small molecule-RNA interactions.

21 January 2018

1 reference

Conditional gene expression by controlling translation with tetracycline-binding aptamers

21 January 2018

1 reference

Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

21 January 2018

1 reference

A specific amino acid binding site composed of RNA.

21 January 2018

1 reference

Antibiotic inhibition of group I ribozyme function

21 January 2018

1 reference

Adaptive recognition by nucleic acid aptamers

21 January 2018

1 reference

Sensing Small Molecules by Nascent RNA

21 January 2018

1 reference

An mRNA structure that controls gene expression by binding FMN

21 January 2018

1 reference

Genetic control by a metabolite binding mRNA

21 January 2018

1 reference

Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts

21 January 2018

1 reference

In vitro selection of RNA aptamers derived from a genomic human library against the TAR RNA element of HIV-1.

21 January 2018

1 reference

A small aptamer with strong and specific recognition of the triphosphate of ATP

21 January 2018

1 reference

Single-stranded DNA aptamers specific for antibiotics tetracyclines.

21 January 2018

1 reference

An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits haemagglutinin-mediated membrane fusion

21 January 2018

1 reference

Mutations that confer resistance to template-analog inhibitors of human immunodeficiency virus (HIV) type 1 reverse transcriptase lead to severe defects in HIV replication

21 January 2018

1 reference

High-resolution molecular discrimination by RNA.

21 January 2018

1 reference

In vitro selection of RNA molecules that bind specific ligands

21 January 2018

1 reference

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

1 reference

In vitro selection of RNA aptamers that bind to colicin E3 and structurally resemble the decoding site of 16S ribosomal RNA.

21 January 2018

1 reference

Short bioactive Spiegelmers to migraine-associated calcitonin gene-related peptide rapidly identified by a novel approach: tailored-SELEX

21 January 2018

1 reference

The DNA aptamers that specifically recognize ricin toxin are selected by two in vitro selection methods

21 January 2018

1 reference

Selection of the simplest RNA that binds isoleucine

21 January 2018

1 reference

Selection of RNA-aptamer against human influenza B virus

21 January 2018

1 reference

Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands

21 January 2018

1 reference

Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides

21 January 2018

1 reference

Fluorescence-activated cell sorting for aptamer SELEX with cell mixtures

21 January 2018

1 reference

Effective isolation of RNA aptamer through suppression of PCR bias.

21 January 2018

1 reference

Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX.

21 January 2018

1 reference

Encapsulating streptomycin within a small 40-mer RNA

21 January 2018

1 reference

Capillary electrophoresis-SELEX selection of aptamers with affinity for HIV-1 reverse transcriptase

21 January 2018

1 reference

Production and processing of aptamer microarrays

21 January 2018

1 reference

In silico selection of RNA aptamers

21 January 2018

1 reference

Next-generation DNA sequencing

21 January 2018

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 January 2018

1 reference

The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria

21 January 2018

1 reference

CMfinder--a covariance model based RNA motif finding algorithm

21 January 2018

1 reference

Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline

21 January 2018

1 reference

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

21 January 2018

1 reference

A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

21 January 2018

1 reference

The distributions, mechanisms, and structures of metabolite-binding riboswitches

21 January 2018

1 reference

Tandem riboswitch architectures exhibit complex gene control functions.

21 January 2018

1 reference

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

21 January 2018

1 reference

Metabolite-binding RNA domains are present in the genes of eukaryotes

21 January 2018

1 reference

Riboswitch-dependent gene regulation and its evolution in the plant kingdom

21 January 2018

1 reference

Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

21 January 2018

1 reference

Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR

21 January 2018

1 reference

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

21 January 2018

1 reference

Control of gene expression by a natural metabolite-responsive ribozyme

21 January 2018

1 reference

The antiquity of RNA-based evolution

21 January 2018

1 reference

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

21 January 2018

1 reference

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

21 January 2018

1 reference

The Listeria transcriptional landscape from saprophytism to virulence.

21 January 2018

1 reference

A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

21 January 2018

1 reference

Riboswitch finder--a tool for identification of riboswitch RNAs

21 January 2018

1 reference

Computational identification of riboswitches based on RNA conserved functional sequences and conformations

21 January 2018

1 reference

RNA sequence analysis using covariance models

21 January 2018

1 reference

Rfam: updates to the RNA families database

21 January 2018

1 reference

Infernal 1.0: inference of RNA alignments

21 January 2018

1 reference

RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements

21 January 2018

1 reference

RNA pseudoknot prediction in energy-based models

21 January 2018

1 reference

Challenges of ligand identification for riboswitch candidates

21 January 2018

1 reference

Genomic SELEX: a discovery tool for genomic aptamers

21 January 2018

1 reference

Genomic systematic evolution of ligands by exponential enrichment (Genomic SELEX) for the identification of protein-binding RNAs independent of their expression levels

21 January 2018

1 reference

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

Enterotypes of the human gut microbiome

21 January 2018

1 reference

Analysis of one million base pairs of Neanderthal DNA

21 January 2018

1 reference

Sequencing and analysis of Neanderthal genomic DNA

21 January 2018

1 reference

In vitro splicing of the ribosomal RNA precursor in nuclei of Tetrahymena

21 January 2018

1 reference

In vitro splicing of the ribosomal RNA precursor of tetrahymena: Involvement of a guanosine nucleotide in the excision of the intervening sequence

21 January 2018

1 reference

Excised group II introns in yeast mitochondria are lariats and can be formed by self-splicing in vitro

21 January 2018

1 reference

The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

21 January 2018

1 reference

Comparative and functional anatomy of group II catalytic introns--a review

21 January 2018

1 reference

21 January 2018

1 reference

Two sequences participating in the autolytic processing of satellite tobacco ringspot virus complementary RNA

21 January 2018

1 reference

Sequences required for self-catalysed cleavage of the satellite RNA of tobacco ringspot virus

21 January 2018

1 reference

Autolytic processing of dimeric plant virus satellite RNA

21 January 2018

1 reference

A site-specific self-cleavage reaction performed by a novel RNA in Neurospora mitochondria

21 January 2018

1 reference

Ubiquitous presence of the hammerhead ribozyme motif along the tree of life

21 January 2018

1 reference

Small self-cleaving ribozymes

21 January 2018

1 reference

Tertiary contacts distant from the active site prime a ribozyme for catalysis

21 January 2018

1 reference

Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

21 January 2018

1 reference

Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

21 January 2018

1 reference

Metal ion specificities for folding and cleavage activity in the Schistosoma hammerhead ribozyme

21 January 2018

1 reference

Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana

21 January 2018

1 reference

Intronic hammerhead ribozymes are ultraconserved in the human genome

21 January 2018

1 reference

A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA

21 January 2018

1 reference

Exogenous control of mammalian gene expression through modulation of RNA self-cleavage

21 January 2018

1 reference

Natural and engineered nucleic acids as tools to explore biology

21 January 2018

1 reference

An allosteric self-splicing ribozyme triggered by a bacterial second messenger

21 January 2018

1 reference

A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene

21 January 2018

1 reference

The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting

21 January 2018

1 reference

Searching for patterns in genomic data

21 January 2018

1 reference

Distribution of hammerhead and hammerhead-like RNA motifs through the GenBank.

21 January 2018

1 reference

From alpaca to zebrafish: hammerhead ribozymes wherever you look

21 January 2018

1 reference

Structure-based search reveals hammerhead ribozymes in the human microbiome

21 January 2018

1 reference

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

In vitro selection of hammerhead ribozyme sequence variants

21 January 2018

1 reference

In vitro evolution suggests multiple origins for the hammerhead ribozyme

21 January 2018

1 reference

In vitro selection of hammerhead ribozymes containing a bulged nucleotide in stem II.

21 January 2018

1 reference

In vitro selection of self-cleaving RNAs with a low pH optimum

21 January 2018

1 reference

Selected classes of minimised hammerhead ribozyme have very high cleavage rates at low Mg2+ concentration

21 January 2018

1 reference

Selection in vitro of novel ribozymes from a partially randomized U2 and U6 snRNA library

21 January 2018

1 reference

Design of hairpin ribozyme variants with improved activity for poorly processed substrates.

21 January 2018

1 reference

Engineered Ribozymes as Molecular Tools for Site‐Specific Alteration of RNA Sequence

21 January 2018

1 reference

In vitro selection of adenine-dependent hairpin ribozymes

21 January 2018

1 reference

In vitro selection of adenine-dependent ribozyme against Tpl2/Cot oncogene.

21 January 2018

1 reference

Rational design of allosteric ribozymes

21 January 2018

1 reference

A ligand-dependent hammerhead ribozyme switch for controlling mammalian gene expression

21 January 2018

1 reference

In vitro selection of allosteric ribozymes

21 January 2018

1 reference

RNA-catalysed nucleotide synthesis

21 January 2018

1 reference

Peptide bond formation by in vitro selected ribozymes

21 January 2018

1 reference

Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization

21 January 2018

1 reference

Selection of an improved RNA polymerase ribozyme with superior extension and fidelity

21 January 2018

1 reference

Ribozyme-catalyzed transcription of an active ribozyme

21 January 2018

1 reference

A self-splicing RNA excises an intron lariat

21 January 2018

1 reference

Design of allosteric hammerhead ribozymes activated by ligand-induced structure stabilization

21 January 2018

1 reference

In vitro evolution of a self-alkylatlng ribozyme

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/WRNA.105

1 reference

25 August 2017

1 reference