(Q37934231)

25 August 2017

1 reference

title

Computational prediction of eukaryotic phosphorylation sites (English)

1 reference

25 August 2017

0 references

2

Anthony Kusalik

1 reference

25 August 2017

Brett Trost

1

1 reference

PubMed ID

21926126

25 August 2017

language of work or name

English

0 references

publication date

16 September 2011

1 reference

25 August 2017

1 reference

25 August 2017

27

1 reference

25 August 2017

21

1 reference

25 August 2017

2927-2935

1 reference

AMS 3.0: prediction of post-translational modifications.

25 August 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PhosphoBase: a database of phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phosphopeptide fragmentation and analysis by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Structural basis and prediction of substrate specificity in protein serine/threonine kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Insulin receptor substrate 1 regulates the cellular differentiation and the matrix metallopeptidase expression of preosteoblastic cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Arabidopsis kinome: after the casting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Prediction of kinase-specific phosphorylation sites using conditional random fields

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phospho.ELM: a database of phosphorylation sites--update 2008.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Evidence for a minimal eukaryotic phosphoproteome?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phospho.ELM: a database of phosphorylation sites--update 2011

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Intrinsic disorder and protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Activation of the TRPV4 ion channel is enhanced by phosphorylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Most mammalian mRNAs are conserved targets of microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Musite, a tool for global prediction of general and kinase-specific phosphorylation sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

3D-Jury: a simple approach to improve protein structure predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PHOSIDA 2011: the posttranslational modification database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phosphoproteomics toolbox: computational biology, protein chemistry and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Peptide chips for the quantitative evaluation of protein kinase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A tissue-specific atlas of mouse protein phosphorylation and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The importance of intrinsic disorder for protein phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

NetPhosYeast: prediction of protein phosphorylation sites in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Genome to kinome: species-specific peptide arrays for kinome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A probabilistic meta-predictor for the MHC class II binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Counter-regulation mechanism of IL-4 and IFN-α signal transduction through cytosolic retention of the pY-STAT6:pY-STAT2:p48 complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Prediction of phosphorylation sites using SVMs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Charge environments around phosphorylation sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Substrate specificity of protein kinases and computational prediction of substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PhosphoBase, a database of phosphorylation sites: release 2.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The role of YAP transcription coactivator in regulating stem cell self-renewal and differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Systematic Discovery of In Vivo Phosphorylation Networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Meta-prediction of protein subcellular localization with reduced voting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Identifying human kinase-specific protein phosphorylation sites by integrating heterogeneous information from various sources

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Rapid immunosuppressive effects of glucocorticoids mediated through Lck and Fyn.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Conservation of protein phosphorylation sites within gene families and across species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The protein kinase complement of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phosphorylation of SUMO-1 occurs in vivo and is conserved through evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Mitogenic activation, phosphorylation, and nuclear translocation of protein kinase Bbeta

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Kinase-specific prediction of protein phosphorylation sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

AutoMotif Server for prediction of phosphorylation sites in proteins using support vector machine: 2007 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A role for p38 MAPK in the regulation of ciliary motion in a eukaryote

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Genome-wide analysis to predict protein sequence variations that change phosphorylation sites or their corresponding kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Predicting protein post-translational modifications using meta-analysis of proteome scale data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Predicting the phosphorylation sites using hidden Markov models and machine learning methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PROSITE: a documented database using patterns and profiles as motif descriptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Tissue-specific expression of a splicing mutation in the IKBKAP gene causes familial dysautonomia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Use of an oriented peptide library to determine the optimal substrates of protein kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Enhanced prediction of conformational flexibility and phosphorylation in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Role of Stat5 in type I interferon-signaling and transcriptional regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Prediction of PK-specific phosphorylation site based on information entropy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Hydrogen peroxide stress stimulates phosphorylation of FoxO1 in rat aortic endothelial cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Nuclear localization of p38 MAPK in response to DNA damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

GPS: a comprehensive www server for phosphorylation sites prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A summary of computational resources for protein phosphorylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

A motif-based profile scanning approach for genome-wide prediction of signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

SiteSeek: post-translational modification analysis using adaptive locality-effective kernel methods and new profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Identifying protein-kinase-specific phosphorylation sites based on the Bagging-AdaBoost ensemble approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The minimum substrate of cyclic AMP-stimulated protein kinase, as studied by synthetic peptides representing the phosphorylatable site of pyruvate kinase (type L) of rat liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

Tau protein is hyperphosphorylated in a site-specific manner in apoptotic neuronal PC12 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

GPS: a novel group-based phosphorylation predicting and scoring method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

The Serine/Threonine/Tyrosine Phosphoproteome of the Model BacteriumBacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTR525

10.1093/BIOINFORMATICS/BTR525

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/TrostK11

25 August 2017

1 reference

DBLP Dataset 2021-01-02

release_yioszothbzcozgwrqvtzntgh6q

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/yioszothbzcozgwrqvtzntgh6q

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

21926126

1 reference

PubMed ID

21926126