(Q37939072)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

review article

1 reference

title

Toward more accurate pan-specific MHC-peptide binding prediction: a review of current methods and tools (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Lianming Zhang

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Keiko Udaka

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Shanfeng Zhu

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

publication date

22 September 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

13 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

350-364

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

More than one reason to rethink the use of peptides in vaccine design

13 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Induction of potent CD4+ T cell-mediated antitumor responses by a helper HER-2/neu peptide linked to the Ii-Key moiety of the invariant chain

21 January 2018

1 reference

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Application of HLA class II transgenic mice to study autoimmune regulation

21 January 2018

1 reference

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Targeting the MHC II presentation pathway in allergy vaccine development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

21 January 2018

1 reference

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21 January 2018

The IMGT/HLA database

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Methods and protocols for prediction of immunogenic epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

21 January 2018

1 reference

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Immune epitope database analysis resource (IEDB-AR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Predicting MHC-II binding affinity using multiple instance regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Peptide binding predictions for HLA DR, DP and DQ molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

The immune epitope database 2.0.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Learning MHC I--peptide binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Efficient peptide-MHC-I binding prediction for alleles with few known binders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

NetMHCpan, a method for MHC class I binding prediction beyond humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

ProPred: prediction of HLA-DR binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Shift-invariant adaptive double threading: learning MHC II-peptide binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

MultiRTA: a simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Prediction of promiscuous peptides that bind HLA class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Peptides naturally presented by MHC class I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

SYFPEITHI: database for MHC ligands and peptide motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

PEPVAC: a web server for multi-epitope vaccine development based on the prediction of supertypic MHC ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

NetCTLpan: pan-specific MHC class I pathway epitope predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Prediction of MHC-peptide binding: a systematic and comprehensive overview

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

On Evaluating MHC-II Binding Peptide Prediction Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

A systematic assessment of MHC class II peptide binding predictions and evaluation of a consensus approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

A community resource benchmarking predictions of peptide binding to MHC-I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Major histocompatibility complex class I binding predictions as a tool in epitope discovery.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

MHC class II epitope predictive algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Measuring the accuracy of diagnostic systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

IPD--the Immuno Polymorphism Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

MHCBN 4.0: A database of MHC/TAP binding peptides and T-cell epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

Leveraging information across HLA alleles/supertypes improves epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

The universal protein resource (UniProt)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

A probabilistic meta-predictor for the MHC class II binding peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

MetaMHC: a meta approach to predict peptides binding to MHC molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBR060

21 January 2018

Identifiers

DOI

10.1093/BIB/BBR060

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21949215%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

DBLP publication ID

journals/bib/ZhangUMZ12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference