(Q38132094)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Unmasking the information encoded as structural motifs of viral RNA genomes: a potential antiviral target (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author

Alfredo Berzal-Herranz

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author name string

Cristina Romero-López

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

language of work or name

1 reference

27 August 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

Reviews in Medical Virology

8 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

volume

23

1 reference

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8 March 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

page(s)

340-354

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

RNA based evolutionary optimization

8 March 2020

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Initiation of protein synthesis from the A site of the ribosome

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A tertiary structure model of the internal ribosome entry site (IRES) for methionine-independent initiation of translation

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21 January 2018

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The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold

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The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

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Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit

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Structural and mechanistic insights into hepatitis C viral translation initiation

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Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2.

21 January 2018

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Structural organization of a viral IRES depends on the integrity of the GNRA motif.

21 January 2018

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In vivo footprint of a picornavirus internal ribosome entry site reveals differences in accessibility to specific RNA structural elements

21 January 2018

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Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation.

21 January 2018

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Structural analysis provides insights into the modular organization of picornavirus IRES.

21 January 2018

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Interaction of the eIF4G initiation factor with the aphthovirus IRES is essential for internal translation initiation in vivo

21 January 2018

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IRES interaction with translation initiation factors: functional characterization of novel RNA contacts with eIF3, eIF4B, and eIF4GII.

21 January 2018

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Eukaryotic initiation factors 4G and 4A mediate conformational changes downstream of the initiation codon of the encephalomyocarditis virus internal ribosomal entry site

21 January 2018

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Evidence for an RNA chaperone function of polypyrimidine tract-binding protein in picornavirus translation

21 January 2018

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The leader of human immunodeficiency virus type 1 genomic RNA harbors an internal ribosome entry segment that is active during the G2/M phase of the cell cycle

21 January 2018

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A dormant internal ribosome entry site controls translation of feline immunodeficiency virus.

21 January 2018

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The human immunodeficiency virus type 1 gag gene encodes an internal ribosome entry site

21 January 2018

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A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon

21 January 2018

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End-to-end communication in the modulation of translation by mammalian RNA viruses

21 January 2018

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Towards identification ofcis-acting elements involved in the replication of enterovirus and rhinovirus RNAs: a proposal for the existence of tRNA-like terminal structures

21 January 2018

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21 January 2018

Genetics of poliovirus

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Structural requirements of the higher order RNA kissing element in the enteroviral 3'UTR

21 January 2018

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Cross-talk between orientation-dependent recognition determinants of a complex control RNA element, the enterovirus oriR.

21 January 2018

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Attenuated Foot-and-Mouth Disease Virus RNA Carrying a Deletion in the 3' Noncoding Region Can Elicit Immunity in Swine

21 January 2018

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The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region

21 January 2018

1 reference

In vivo analysis of the 3' untranslated region of the hepatitis C virus after in vitro mutagenesis of an infectious cDNA clone

21 January 2018

1 reference

Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo

21 January 2018

1 reference

Genetic Analysis of Sequences in the 3' Nontranslated Region of Hepatitis C Virus That Are Important for RNA Replication

21 January 2018

1 reference

Structure-function analysis of the 3' stem-loop of hepatitis C virus genomic RNA and its role in viral RNA replication

21 January 2018

1 reference

3' nontranslated RNA signals required for replication of hepatitis C virus RNA

21 January 2018

1 reference

3' RNA Elements in Hepatitis C Virus Replication: Kissing Partners and Long Poly(U)

21 January 2018

1 reference

Specific Interaction of Hepatitis C Virus Protease/Helicase NS3 with the 3'-Terminal Sequences of Viral Positive- and Negative-Strand RNA

21 January 2018

1 reference

Cellular proteins bind to the poly(U) tract of the 3' untranslated region of hepatitis C virus RNA genome

21 January 2018

1 reference

Hepatitis C Virus 3'X Region Interacts with Human Ribosomal Proteins

21 January 2018

1 reference

The polypyrimidine tract-binding protein (PTB) is required for efficient replication of hepatitis C virus (HCV) RNA.

21 January 2018

1 reference

Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication

21 January 2018

1 reference

A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B

21 January 2018

1 reference

The 3'-nucleotides of flavivirus genomic RNA form a conserved secondary structure

21 January 2018

1 reference

Interaction between the Cellular Protein eEF1A and the 3'-Terminal Stem-Loop of West Nile Virus Genomic RNA Facilitates Viral Minus-Strand RNA Synthesis

21 January 2018

1 reference

RNA-RNA and RNA-protein interactions in coronavirus replication and transcription

21 January 2018

1 reference

Characterization of an essential RNA secondary structure in the 3' untranslated region of the murine coronavirus genome

21 January 2018

1 reference

A hypervariable region within the 3' cis-acting element of the murine coronavirus genome is nonessential for RNA synthesis but affects pathogenesis

21 January 2018

1 reference

Evolutionarily conserved RNA secondary structures in coding and non-coding sequences at the 3' end of the hepatitis G virus/GB-virus C genome.

21 January 2018

1 reference

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

21 January 2018

1 reference

Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

21 January 2018

1 reference

Evidence of a novel RNA secondary structure in the coding region of HIV-1 pol gene

21 January 2018

1 reference

Phylogenetic prediction of cis-acting elements: a cre-like sequence in Norovirus genome?

21 January 2018

1 reference

Identification of potential conserved RNA secondary structure throughout influenza A coding regions

21 January 2018

1 reference

Novel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclization

21 January 2018

1 reference

The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication

21 January 2018

1 reference

A coding RNA sequence acts as a replication signal in cardioviruses

21 January 2018

1 reference

Identification of a cis-acting replication element within the poliovirus coding region

21 January 2018

1 reference

Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg

21 January 2018

1 reference

Poliovirus cis-acting replication element-dependent VPg Uridylylation lowers the Km of the initiating nucleoside triphosphate for viral RNA replication

21 January 2018

1 reference

A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

21 January 2018

1 reference

cis-acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome

21 January 2018

1 reference

A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

21 January 2018

1 reference

Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance

21 January 2018

1 reference

Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions?

21 January 2018

1 reference

A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

21 January 2018

1 reference

The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation.

21 January 2018

1 reference

The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome

21 January 2018

1 reference

Determinants of hepatitis C translational initiation in vitro, in cultured cells and mice

21 January 2018

1 reference

The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase

21 January 2018

1 reference

The Hepatitis C Virus RNA 3'-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site

21 January 2018

1 reference

Hepatitis C virus internal ribosome entry site-mediated translation is stimulated by cis-acting RNA elements and trans-acting viral factors

21 January 2018

1 reference

Conserved elements in the 3' untranslated region of flavivirus RNAs and potential cyclization sequences

21 January 2018

1 reference

Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

21 January 2018

1 reference

Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication

21 January 2018

1 reference

Controlled, targeted, intracellular expression of ribozymes: progress and problems

21 January 2018

1 reference

Nucleic acids-based therapeutics in the battle against pathogenic viruses

21 January 2018

1 reference

Molecular mechanisms of action of antisense drugs

21 January 2018

1 reference

A phase I trial of an antisense inhibitor of hepatitis C virus (ISIS 14803), administered to chronic hepatitis C patients

21 January 2018

1 reference

Inhibition of HIV-1 replication by RNA targeted against the LTR region

21 January 2018

1 reference

Inhibition of infectious human immunodeficiency virus type 1 virions via lentiviral vector encoded short antisense RNAs

21 January 2018

1 reference

Gene transfer in humans using a conditionally replicating lentiviral vector

21 January 2018

1 reference

RNA interference for viral infections

21 January 2018

1 reference

Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality

21 January 2018

1 reference

Human immunodeficiency virus type 1 escape from RNA interference

21 January 2018

1 reference

Anticipating and blocking HIV-1 escape by second generation antiviral shRNAs

21 January 2018

1 reference

Inhibition of hepatitis C virus replication by intracellular delivery of multiple siRNAs by nanosomes

21 January 2018

1 reference

Sustained delivery of siRNAs targeting viral infection by cell-degradable multilayered polyelectrolyte films

21 January 2018

1 reference

In vitro selection of RNA molecules that bind specific ligands

21 January 2018

1 reference

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

1 reference

In vitro and ex vivo selection procedures for identifying potentially therapeutic DNA and RNA molecules.

21 January 2018

1 reference

In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.

21 January 2018

1 reference

RNA and N3'-->P5' kissing aptamers targeted to the trans-activation responsive (TAR) RNA of the human immunodeficiency virus-1.

21 January 2018

1 reference

Loop-loop interaction of HIV-1 TAR RNA with N3'-->P5' deoxyphosphoramidate aptamers inhibits in vitro Tat-mediated transcription

21 January 2018

1 reference

Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer

21 January 2018

1 reference

NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer

21 January 2018

1 reference

Apical loop-internal loop interactions: a new RNA-RNA recognition motif identified through in vitro selection against RNA hairpins of the hepatitis C virus mRNA.

21 January 2018

1 reference

RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region

21 January 2018

1 reference

Antisense oligonucleotides targeted to the domain IIId of the hepatitis C virus IRES compete with 40S ribosomal subunit binding and prevent in vitro translation

21 January 2018

1 reference

A hepatitis C virus (HCV) internal ribosome entry site (IRES) domain III-IV-targeted aptamer inhibits translation by binding to an apical loop of domain IIId

21 January 2018

1 reference

RNA aptamer-mediated interference of HCV replication by targeting the CRE-5BSL3.2 domain

21 January 2018

1 reference

Targets and tools: recent advances in the development of anti-HCV nucleic acids.

21 January 2018

1 reference

Aptamers in the virologists' toolkit

21 January 2018

1 reference

Interfering with hepatitis C virus IRES activity using RNA molecules identified by a novel in vitro selection method.

21 January 2018

1 reference

Inhibition of hepatitis C virus internal ribosome entry site-mediated translation by an RNA targeting the conserved IIIf domain.

21 January 2018

1 reference

Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy

21 January 2018

1 reference

Increased inhibitory ability of conjugated RNA aptamers against the HCV IRES.

21 January 2018

1 reference

Inhibition of hepatitis C virus replication and internal ribosome entry site-dependent translation by an RNA molecule

21 January 2018

1 reference

An engineered inhibitor RNA that efficiently interferes with hepatitis C virus translation and replication

21 January 2018

1 reference

Improving the stability of aptamers by chemical modification

21 January 2018

1 reference

Pharmacokinetics and biodistribution of novel aptamer compositions

21 January 2018

1 reference

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

21 January 2018

1 reference

Crystal structure of paromomycin docked into the eubacterial ribosomal decoding A site

21 January 2018

1 reference

HIV-1 RNA dimerization initiation site is structurally similar to the ribosomal A site and binds aminoglycoside antibiotics

21 January 2018

1 reference

Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell

21 January 2018

1 reference

A proposal for a new HIV-1 DLS structural model

21 January 2018

1 reference

Branched peptides as therapeutics

21 January 2018

1 reference

Toward targeting RNA structure: branched peptides as cell-permeable ligands to TAR RNA.

21 January 2018

1 reference

Conformational inhibition of the hepatitis C virus internal ribosome entry site RNA

21 January 2018

1 reference

Structure of a hepatitis C virus RNA domain in complex with a translation inhibitor reveals a binding mode reminiscent of riboswitches

21 January 2018

1 reference

cis-acting genomic elements and trans-acting proteins involved in the assembly of RNA viruses

21 January 2018

1 reference

12 December 2020

Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

1 reference

12 December 2020

Structure of the 3' terminus of the hepatitis C virus genome

1 reference

12 December 2020

Viral RNA and evolved mutational robustness

1 reference

12 December 2020

A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication

1 reference

12 December 2020

The HIV-1 leader RNA conformational switch regulates RNA dimerization but does not regulate mRNA translation

1 reference

12 December 2020

Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA

1 reference

12 December 2020

Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome

1 reference

12 December 2020

A bulged stem-loop structure in the 3' untranslated region of the genome of the coronavirus mouse hepatitis virus is essential for replication

1 reference

12 December 2020

A cell cycle-dependent protein serves as a template-specific translation initiation factor

1 reference

12 December 2020

2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription

1 reference

12 December 2020

The La protein from human liver cells interacts specifically with the U-rich region in the hepatitis C virus 3' untranslated region.

1 reference

12 December 2020

Cap-independent translation of picornavirus RNAs: structure and function of the internal ribosomal entry site

1 reference

12 December 2020

Structural and functional integrity of the coxsackievirus B3 oriR: spacing between coaxial RNA helices

1 reference

12 December 2020

Bimodal loop-loop interactions increase the affinity of RNA aptamers for HIV-1 RNA structures

1 reference

12 December 2020

Unique features of internal initiation of hepatitis C virus RNA translation

1 reference

12 December 2020

Biochemical and genetic evidence for a pseudoknot structure at the 3' terminus of the poliovirus RNA genome and its role in viral RNA amplification

1 reference

12 December 2020

Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA

1 reference

12 December 2020

Identifiers

DOI

10.1002/RMV.1756

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23983005%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

0 references

1 reference

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