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Fundamentals of vitamin D hormone-regulated gene expression
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Europe PubMed Central
PMCID
4144817
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30 August 2017
title
Fundamentals of vitamin D hormone-regulated gene expression
(English)
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Europe PubMed Central
PMCID
4144817
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30 August 2017
main subject
vitamin D
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author
Mark Meyer
object named as
Mark B Meyer
series ordinal
2
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author name string
J Wesley Pike
series ordinal
1
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Europe PubMed Central
PMCID
4144817
retrieved
30 August 2017
publication date
12 November 2013
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PMCID
4144817
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30 August 2017
published in
The Journal of Steroid Biochemistry and Molecular Biology
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Europe PubMed Central
PMCID
4144817
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30 August 2017
volume
144 Pt A
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Europe PubMed Central
PMCID
4144817
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30 August 2017
page(s)
5-11
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Europe PubMed Central
PMCID
4144817
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30 August 2017
cites work
Non-classical mechanisms of transcriptional regulation by the vitamin D receptor: insights into calcium homeostasis, immune system regulation and cancer chemoprevention
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6 September 2017
A vitamin D receptor/SMAD genomic circuit gates hepatic fibrotic response
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6 September 2017
Genome organization and long-range regulation of gene expression by enhancers
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6 September 2017
Molecular network of chromatin immunoprecipitation followed by deep sequencing-based vitamin D receptor target genes
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6 September 2017
Multiplex genome engineering using CRISPR/Cas systems
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6 September 2017
ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions
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Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation
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6 September 2017
Corepressors (NCoR and SMRT) as well as coactivators are recruited to positively regulated 1α,25-dihydroxyvitamin D3-responsive genes
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Genomic approaches towards finding cis-regulatory modules in animals
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Epigenetic protein families: a new frontier for drug discovery
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A transcription activator-like effector toolbox for genome engineering
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VDR/RXR and TCF4/β-catenin cistromes in colonic cells of colorectal tumor origin: impact on c-FOS and c-MYC gene expression
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6 September 2017
Regulation of target gene expression by the vitamin D receptor - an update on mechanisms
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6 September 2017
Nuclear hormone 1α,25-dihydroxyvitamin D3 elicits a genome-wide shift in the locations of VDR chromatin occupancy
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6 September 2017
Genome-wide principles of gene regulation by the vitamin D receptor and its activating ligand
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6 September 2017
Genome-scale techniques highlight the epigenome and redefine fundamental principles of gene regulation
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6 September 2017
Mouse Rankl expression is regulated in T cells by c-Fos through a cluster of distal regulatory enhancers designated the T cell control region
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6 September 2017
Mapping and analysis of chromatin state dynamics in nine human cell types
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6 September 2017
RNA sequencing: advances, challenges and opportunities
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6 September 2017
Vitamin D, disease and therapeutic opportunities
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PubMed Central
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6 September 2017
A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution
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PubMed Central
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6 September 2017
Mediator and cohesin connect gene expression and chromatin architecture
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PubMed Central
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6 September 2017
Discovery and characterization of chromatin states for systematic annotation of the human genome
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6 September 2017
Chromatin structure and the inheritance of epigenetic information
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6 September 2017
A downstream intergenic cluster of regulatory enhancers contributes to the induction of CYP24A1 expression by 1alpha,25-dihydroxyvitamin D3.
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6 September 2017
The nuclear vitamin D receptor controls the expression of genes encoding factors which feed the "Fountain of Youth" to mediate healthful aging
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PubMed Central
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6 September 2017
Multifunctional enhancers regulate mouse and human vitamin D receptor gene transcription
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PubMed Central
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6 September 2017
DNA demethylation in hormone-induced transcriptional derepression
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PubMed Central
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6 September 2017
Comprehensive mapping of long-range interactions reveals folding principles of the human genome
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6 September 2017
Vitamin D receptor: molecular signaling and actions of nutritional ligands in disease prevention
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PubMed Central
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6 September 2017
Targeted deletion of a distant transcriptional enhancer of the receptor activator of nuclear factor-kappaB ligand gene reduces bone remodeling and increases bone mass
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PubMed Central
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6 September 2017
Activation of receptor activator of NF-kappaB ligand gene expression by 1,25-dihydroxyvitamin D3 is mediated through multiple long-range enhancers
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Parathyroid hormone controls receptor activator of NF-kappaB ligand gene expression via a distant transcriptional enhancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
6 September 2017
Enhancers located within two introns of the vitamin D receptor gene mediate transcriptional autoregulation by 1,25-dihydroxyvitamin D3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
NF-Y is essential for the recruitment of RNA polymerase II and inducible transcription of several CCAAT box-containing genes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Genomic approaches that aid in the identification of transcription factor target genes.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Silencing of human polycomb target genes is associated with methylation of histone H3 Lys 27.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
General method for the modification of different BAC types and the rapid generation of BAC transgenic mice
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Chromosomal receptor for a vitamin D metabolite
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Formaldehyde-mediated DNA-protein crosslinking: a probe for in vivo chromatin structures
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PubMed Central
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6 September 2017
Sequence elements in the human osteocalcin gene confer basal activation and inducible response to hormonal vitamin D3.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Identification of a DNA sequence responsible for binding of the 1,25-dihydroxyvitamin D3 receptor and 1,25-dihydroxyvitamin D3 enhancement of mouse secreted phosphoprotein 1 (SPP-1 or osteopontin) gene expression
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Vitamin D receptor interaction with specific DNA requires a nuclear protein and 1,25-dihydroxyvitamin D3.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
The vitamin D-responsive element in the human osteocalcin gene. Association with a nuclear proto-oncogene enhancer
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
RXR beta: a coregulator that enhances binding of retinoic acid, thyroid hormone, and vitamin D receptors to their cognate response elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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6 September 2017
Direct repeats as selective response elements for the thyroid hormone, retinoic acid, and vitamin D3 receptors
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
6 September 2017
The mouse RANKL gene locus is defined by a broad pattern of histone H4 acetylation and regulated through distinct distal enhancers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
14 September 2017
1Alpha,25(OH)2D3-induced transrepression by vitamin D receptor through E-box-type elements in the human parathyroid hormone gene promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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14 September 2017
Transrepression by a liganded nuclear receptor via a bHLH activator through co-regulator switching
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
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14 September 2017
The concept of multiple vitamin D signaling pathways.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
28 September 2017
Genome-wide analysis of the VDR/RXR cistrome in osteoblast cells provides new mechanistic insight into the actions of the vitamin D hormone
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
23 June 2018
Bmp2 transcription in osteoblast progenitors is regulated by a distant 3' enhancer located 156.3 kilobases from the promoter
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
23 June 2018
1,25-Dihydroxyvitamin D3 stimulates cyclic vitamin D receptor/retinoid X receptor DNA-binding, co-activator recruitment, and histone acetylation in intact osteoblasts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4144817
retrieved
31 August 2018
An integrated encyclopedia of DNA elements in the human genome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24239506
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functional assessment of two vitamin D-responsive elements in the rat 25-hydroxyvitamin D3 24-hydroxylase gene
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/24239506
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.JSBMB.2013.11.004
1 reference
stated in
Europe PubMed Central
PMCID
4144817
retrieved
30 August 2017
PMCID
4144817
1 reference
stated in
Europe PubMed Central
PMCID
4144817
retrieved
30 August 2017
PubMed ID
24239506
1 reference
stated in
Europe PubMed Central
PMCID
4144817
retrieved
30 August 2017
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