(Q38254995)

1 September 2017

Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics (English)

1 reference

1 September 2017

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Veronika Kucharova

1

1 reference

PubMed ID

25263021

1 September 2017

Harald G Wiker

series ordinal

2

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1 September 2017

19 November 2014

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1 September 2017

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1 September 2017

14

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1 September 2017

23-24

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1 September 2017

2360-2675

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Two-dimensional gel electrophoresis in proteomics: Past, present and future

1 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Analysis and validation of proteomic data generated by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Search of sequence databases with uninterpreted high-energy collision-induced dissociation spectra of peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Probability-based protein identification by searching sequence databases using mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Open mass spectrometry search algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomics: needs and roles to be filled by proteomics in genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

De novo sequencing of peptides by MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

De novo sequencing and homology searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Decoding protein modifications using top-down mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Systems biology: Functional analysis of natural microbial consortia using community proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Sequencing technologies - the next generation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Genome annotation: from sequence to biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Genome (re-)annotation and open-source annotation pipelines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

IMG: the Integrated Microbial Genomes database and comparative analysis system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The RAST Server: rapid annotations using subsystems technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Identifying bacterial genes and endosymbiont DNA with Glimmer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

HMMER web server: interactive sequence similarity searching

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A large-scale evaluation of computational protein function prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Manual curation is not sufficient for annotation of genomic databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The proteome of the bacterium Mycoplasma pneumoniae: comparing predicted open reading frames to identified gene products

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Large-scale prokaryotic gene prediction and comparison to genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Evaluation of three automated genome annotations for Halorhabdus utahensis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A proteogenomic survey of the Medicago truncatula genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Discovery and revision of Arabidopsis genes by proteogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Neglected tropical diseases and omics science: proteogenomics analysis of the promastigote stage of Leishmania major parasite.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

How much non-coding DNA do eukaryotes require?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomics to discover the full coding content of genomes: a computational perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Addressing statistical biases in nucleotide-derived protein databases for proteogenomic search strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic mapping as a complementary method to perform genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The complete genome and proteome of Mycoplasma mobile

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Complete genome and proteome of Acholeplasma laidlawii

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The genome organization of Thermotoga maritima reflects its lifestyle

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Bacterial genome instability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

False discovery rates of protein identifications: a strike against the two-peptide rule

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The transcription unit architecture of the Escherichia coli genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Comparative omics-driven genome annotation refinement: application across Yersiniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

New metrics for comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Powers and pitfalls in sequence analysis: the 70% hurdle

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Genomes OnLine Database (GOLD): a monitor of genome projects world-wide

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Protein surface analysis for function annotation in high-throughput structural genomics pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Predicting gene function by conserved co-expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Activity-based protein profiling: an enabling technology in chemical biology research

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Activity-based protein profiling for the functional annotation of enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Activity-based protein profiling: from enzyme chemistry to proteomic chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Functional imaging of proteases: recent advances in the design and application of substrate-based and activity-based probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Tagging and detection strategies for activity-based proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Applications of small molecule probes in dissecting mechanisms of bacterial virulence and host responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Mechanism-based profiling of enzyme families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Activity-based proteomics of enzyme superfamilies: serine hydrolases as a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Autoproteolytic activation of bacterial toxins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Regulated proteolysis in Gram-negative bacteria--how and when?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Beta-lactams as selective chemical probes for the in vivo labeling of bacterial enzymes involved in cell wall biosynthesis, antibiotic resistance, and virulence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Beta-lactam probes as selective chemical-proteomic tools for the identification and functional characterization of resistance associated enzymes in MRSA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Oxidative modification of proteins: an emerging mechanism of cell signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Statistics of N-terminal alignment as a guide for refining prokaryotic gene annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteome analysis of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

An improved stable isotope N-terminal labeling approach with light/heavy TMPP to automate proteogenomics data validation: dN-TOP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Magnetic immunoaffinity enrichment for selective capture and MS/MS analysis of N-terminal-TMPP-labeled peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A perfect genome annotation is within reach with the proteomics and genomics alliance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteolytic post-translational modification of proteins: proteomic tools and methodology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Protein alpha-N-acetylation studied by N-terminomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

N-terminal protein processing: a comparative proteogenomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Deciphering the model pathogenic fungus Cryptococcus neoformans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Selecting protein N-terminal peptides by combined fractional diagonal chromatography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The proteomics of N-terminal methionine cleavage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Unexpected diversity of signal peptides in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

SignalP 4.0: discriminating signal peptides from transmembrane regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of bacteria and archaea: a 46 organism case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

How many signal peptides are there in bacteria?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Computational prediction and experimental validation of signal peptide cleavages in the extracellular proteome of a natural microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Beyond gene expression: the impact of protein post-translational modifications in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Quantitative, high-resolution proteomics for data-driven systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Post-translational modifications and mass spectrometry detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Status of large-scale analysis of post-translational modifications by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Post-translational modifications of Desulfovibrio vulgaris Hildenborough sulfate reduction pathway proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

What does the future hold for Top Down mass spectrometry?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Protein identification using top-down.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Size-sorting combined with improved nanocapillary liquid chromatography-mass spectrometry for identification of intact proteins up to 80 kDa

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Impact of phosphoproteomics on studies of bacterial physiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Bacterial phosphoproteomic analysis reveals the correlation between protein phosphorylation and bacterial pathogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The phosphoproteome and its physiological dynamics in Staphylococcus aureus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Quantitative phosphoproteome analysis of Bacillus subtilis reveals novel substrates of the kinase PrkC and phosphatase PrpC

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Introduction to computational proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Inference and validation of protein identifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation data set and peptide identification by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Expressed peptide tags: an additional layer of data for genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteome driven re-evaluation and functional annotation of the Streptococcus pyogenes SF370 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Genome-based peptide fingerprint scanning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

iPiG: integrating peptide spectrum matches into genome browser visualizations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

PepLine: a software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Peppy: proteogenomic search software

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

The proteogenomic mapping tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Protter: interactive protein feature visualization and integration with experimental proteomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

TopFIND 2.0--linking protein termini with proteolytic processing and modifications altering protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

Proteomic Profiling of Intact Proteins Using WAX-RPLC 2-D Separations and FTICR Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400168

21 January 2018

Identifiers

DOI

10.1002/PMIC.201400168

1 reference

1 September 2017

1 reference

PubMed ID

25263021