(Q38301018)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25541518%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

review article

1 reference

title

Recombination in viruses: mechanisms, methods of study, and evolutionary consequences (English)

1 reference

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26 February 2020

2

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26 February 2020

Ferran Palero

4

1 reference

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Fernando González-Candelas

26 February 2020

5

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26 February 2020

author name string

Marcos Pérez-Losada

1

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26 February 2020

Juan Carlos Galán

3

1 reference

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26 February 2020

publication date

23 December 2014

1 reference

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Infection, Genetics and Evolution

26 February 2020

published in

1 reference

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26 February 2020

volume

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25541518%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

page(s)

296-307

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25541518%20AND%20SRC:MED&resulttype=core&format=json

Delineation of the preferences and requirements of the human immunodeficiency virus type 1 dimerization initiation signal by using an in vivo cell-based selection approach

26 February 2020

cites work

1 reference

12 December 2020

Computational design of centralized HIV-1 genes

1 reference

12 December 2020

Analysis of Hepatitis C Virus Superinfection Exclusion by Using Novel Fluorochrome Gene-Tagged Viral Genomes

1 reference

12 December 2020

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

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12 December 2020

Recombination in evolutionary genomics

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12 December 2020

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

1 reference

12 December 2020

The importance and application of the ancestral recombination graph

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12 December 2020

Molecular evolution of human species D adenoviruses

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12 December 2020

The evolution of genome compression and genomic novelty in RNA viruses

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12 December 2020

Estimating diversifying selection and functional constraint in the presence of recombination

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12 December 2020

Recombination in eukaryotic single stranded DNA viruses

1 reference

12 December 2020

Antiretroviral drug resistance mutations in human immunodeficiency virus type 1 reverse transcriptase increase template-switching frequency

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12 December 2020

Genetic diversity of the genus Cosavirus in the family Picornaviridae: a new species, recombination, and 26 new genotypes

1 reference

12 December 2020

Intragenic recombination as a mechanism of genetic diversity in bluetongue virus

1 reference

12 December 2020

Homologous recombination in negative sense RNA viruses

1 reference

12 December 2020

The remarkable frequency of human immunodeficiency virus type 1 genetic recombination

1 reference

12 December 2020

HIV-1 nucleocapsid protein increases strand transfer recombination by promoting dimeric G-quartet formation

1 reference

12 December 2020

The HSV-1 exonuclease, UL12, stimulates recombination by a single strand annealing mechanism

1 reference

12 December 2020

Widely conserved recombination patterns among single-stranded DNA viruses.

1 reference

12 December 2020

Generation of a consensus sequence from prevalent and incident HIV-1 infections in West Africa to guide AIDS vaccine development

1 reference

12 December 2020

Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing

1 reference

12 December 2020

Recombination between poliovirus and coxsackie A viruses of species C: a model of viral genetic plasticity and emergence

1 reference

12 December 2020

Non-random reassortment in human influenza A viruses

1 reference

12 December 2020

Targeted next-generation sequencing detects point mutations, insertions, deletions and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single procedure

1 reference

12 December 2020

Population structure and recombination in environmental isolates of Legionella pneumophila.

1 reference

12 December 2020

Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus

1 reference

12 December 2020

Patterns of Human Immunodeficiency Virus type 1 recombination ex vivo provide evidence for coadaptation of distant sites, resulting in purifying selection for intersubtype recombinants during replication.

1 reference

12 December 2020

A simulation study of the reliability of recombination detection methods.

1 reference

12 December 2020

Simulation of molecular data under diverse evolutionary scenarios

1 reference

12 December 2020

Herpes simplex viruses: mechanisms of DNA replication

1 reference

12 December 2020

Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design?

1 reference

12 December 2020

Recruitment of cellular recombination and repair proteins to sites of herpes simplex virus type 1 DNA replication is dependent on the composition of viral proteins within prereplicative sites and correlates with the induction of the DNA damage respo

1 reference

12 December 2020

Recombination hotspots and host susceptibility modulate the adaptive value of recombination during maize streak virus evolution

1 reference

12 December 2020

Evolutionary recovery of a recombinant viral genome

1 reference

12 December 2020

Sequencing technologies - the next generation

1 reference

12 December 2020

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

1 reference

12 December 2020

Comparative analysis of the molecular mechanisms of recombination in hepatitis C virus

1 reference

12 December 2020

Genetic diversity among Lassa virus strains

1 reference

12 December 2020

Emergence of a group 3 coronavirus through recombination

1 reference

12 December 2020

Branched structures in the intracellular DNA of herpes simplex virus type 1.

1 reference

12 December 2020

Evolution of lamivudine resistance in human immunodeficiency virus type 1-infected individuals: the relative roles of drift and selection

1 reference

12 December 2020

Recombination with herpes simplex virus

1 reference

12 December 2020

Why do RNA viruses recombine?

1 reference

12 December 2020

Evolution and diversity in human herpes simplex virus genomes

1 reference

12 December 2020

A genome-wide comparative evolutionary analysis of herpes simplex virus type 1 and varicella zoster virus

1 reference

12 December 2020

Replication and recombination of herpes simplex virus DNA

1 reference

12 December 2020

Phylogenetic mapping of recombination hotspots in human immunodeficiency virus via spatially smoothed change-point processes

1 reference

12 December 2020

A novel approach to detecting and measuring recombination: new insights into evolution in viruses, bacteria, and mitochondria

1 reference

12 December 2020

Critical role of segment-specific packaging signals in genetic reassortment of influenza A viruses

1 reference

12 December 2020

Recombination resulting in virulence shift in avian influenza outbreak, Chile

1 reference

12 December 2020

Productive homologous and non-homologous recombination of hepatitis C virus in cell culture.

1 reference

12 December 2020

RNA structural elements determine frequency and sites of nonhomologous recombination in an animal plus-strand RNA virus

1 reference

12 December 2020

Next-generation DNA sequencing

1 reference

12 December 2020

Identifying the important HIV-1 recombination breakpoints.

1 reference

12 December 2020

Human Immunodeficiency Virus Type 1 Subtype B Ancestral Envelope Protein Is Functional and Elicits Neutralizing Antibodies in Rabbits Similar to Those Elicited by a Circulating Subtype B Envelope

1 reference

12 December 2020

Accurately measuring recombination between closely related HIV-1 genomes

1 reference

12 December 2020

Copy-choice recombination by reverse transcriptases: reshuffling of genetic markers mediated by RNA chaperones

1 reference

12 December 2020

Automated phylogenetic detection of recombination using a genetic algorithm.

1 reference

12 December 2020

Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum

1 reference

12 December 2020

Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918

1 reference

12 December 2020

Contribution of Vpu, Env, and Nef to CD4 down-modulation and resistance of human immunodeficiency virus type 1-infected T cells to superinfection

1 reference

12 December 2020

Recombination and the molecular clock

1 reference

12 December 2020

A coalescent-based method for detecting and estimating recombination from gene sequences

1 reference

12 December 2020

Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion

1 reference

12 December 2020

Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation

1 reference

12 December 2020

Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

1 reference

12 December 2020

Visualization of the annealing of complementary single-stranded DNA catalyzed by the herpes simplex virus type 1 ICP8 SSB/recombinase

1 reference

12 December 2020

The phylogeography of human viruses

1 reference

12 December 2020

Superinfection prevents recombination of the alphaherpesvirus bovine herpesvirus 1.

1 reference

12 December 2020

A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing

1 reference

12 December 2020

High rate of recombination throughout the human immunodeficiency virus type 1 genome

1 reference

12 December 2020

Expression of animal virus genomes

1 reference

12 December 2020

Recombination in alphaherpesviruses

1 reference

12 December 2020

Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data

1 reference

12 December 2020

RNA recombination in animal and plant viruses

1 reference

12 December 2020

An evolutionary model-based algorithm for accurate phylogenetic breakpoint mapping and subtype prediction in HIV-1

1 reference

12 December 2020

Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots

1 reference

12 December 2020

RDP3: a flexible and fast computer program for analyzing recombination

1 reference

12 December 2020

Initiation of lytic DNA replication in Epstein-Barr virus: search for a common family mechanism.

1 reference

12 December 2020

Influenza virus reassortment occurs with high frequency in the absence of segment mismatch

1 reference

12 December 2020

Global trends in molecular epidemiology of HIV-1 during 2000-2007.

1 reference

12 December 2020

GARD: a genetic algorithm for recombination detection

1 reference

12 December 2020

Specific residues of the influenza A virus hemagglutinin viral RNA are important for efficient packaging into budding virions

1 reference

12 December 2020

Increased detection of HIV-specific T cell responses by combination of central sequences with comparable immunogenicity

1 reference

12 December 2020

Ancestral and consensus envelope immunogens for HIV-1 subtype C.

1 reference

12 December 2020

Frequency and implications of HIV superinfection

1 reference

12 December 2020

Computer simulations: tools for population and evolutionary genetics

1 reference

12 December 2020

Herpes simplex virus replicative concatemers contain L components in inverted orientation

1 reference

12 December 2020

Nucleotide substitutions in dengue virus serotypes from Asian and American countries: insights into intracodon recombination and purifying selection

1 reference

12 December 2020

Variability and genetic structure of plant virus populations.

1 reference

12 December 2020

Identification of a complex env subtype E HIV type 1 virus from the democratic republic of congo, recombinant with A, G, H, J, K, and unknown subtypes

1 reference

12 December 2020

Recombination in hepatitis C virus

1 reference

12 December 2020

Dynamic copy choice: steady state between murine leukemia virus polymerase and polymerase-dependent RNase H activity determines frequency of in vivo template switching

1 reference

12 December 2020

Consequences of recombination on traditional phylogenetic analysis.

1 reference

12 December 2020

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

1 reference

12 December 2020

Mechanistic features of recombination in HIV.

1 reference

12 December 2020

Prevalence of epistasis in the evolution of influenza A surface proteins

1 reference

12 December 2020

Rapid evolution and the importance of recombination to the gastroenteric pathogen Campylobacter jejuni

1 reference

12 December 2020

Molecular mechanisms of recombination restriction in the envelope gene of the human immunodeficiency virus

1 reference

12 December 2020

Error thresholds and the constraints to RNA virus evolution

1 reference

12 December 2020

Recombination in HIV-1

1 reference

12 December 2020

The effect of recombination on the reconstruction of ancestral sequences

1 reference

12 December 2020

High recombination rate in herpes simplex virus type 1 natural populations suggests significant co-infection

1 reference

12 December 2020

New subtypes and genetic recombination in HIV type 1-infecting patients with highly active antiretroviral therapy in Peru (2008-2010)

1 reference

12 December 2020

Recombination promoted by DNA viruses: phage λ to herpes simplex virus.

1 reference

12 December 2020

A trans-Complementing Recombination Trap Demonstrates a Low Propensity of Flaviviruses for Intermolecular Recombination

1 reference

12 December 2020

Emergence of multiple genotypes of H5N1 avian influenza viruses in Hong Kong SAR.

1 reference

12 December 2020

Identification of a major restriction in HIV-1 intersubtype recombination

1 reference

12 December 2020

Evolutionary influences in arboviral disease

1 reference

12 December 2020

Inferring confidence sets of possibly misspecified gene trees.

1 reference

12 December 2020

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

1 reference

12 December 2020

The evolutionary genomics of pathogen recombination

1 reference

12 December 2020

The fine-scale structure of recombination rate variation in the human genome

1 reference

12 December 2020

A Dual Superinfection and Recombination Within HIV-1 Subtype B 12 Years After Primoinfection

1 reference

12 December 2020

A simple and robust statistical test for detecting the presence of recombination

1 reference

12 December 2020

The phylogeography of orangutan foamy viruses supports the theory of ancient repopulation of Sumatra

1 reference

12 December 2020

Mechanisms and factors that influence high frequency retroviral recombination

1 reference

12 December 2020

Inference of microbial recombination rates from metagenomic data

1 reference

12 December 2020

Coalescent simulation of intracodon recombination

1 reference

12 December 2020

Detection of recombination in DNA multiple alignments with hidden Markov models

1 reference

12 December 2020

The Stepping Stone Model of Population Structure and the Decrease of Genetic Correlation with Distance

1 reference

12 December 2020

Evaluation of methods for detecting recombination from DNA sequences: empirical data

1 reference

12 December 2020

1 reference

12 December 2020

Reconstruction and Function of Ancestral Center-of-Tree Human Immunodeficiency Virus Type 1 Proteins

1 reference

12 December 2020

Some Properties of Recombinants Between Type 1 and Type 2 Herpes Simplex Viruses

1 reference

12 December 2020

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

1 reference

12 December 2020

Developing broadly reactive HIV-1/AIDS vaccines: a review of polyvalent and centralized HIV-1 vaccines

1 reference

12 December 2020

Historical perspective--Emergence of influenza A (H1N1) viruses.

1 reference

12 December 2020

HyPhy: hypothesis testing using phylogenies

1 reference

12 December 2020

Dynamics of HIV type 1 recombination following superinfection

1 reference

12 December 2020

Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing

1 reference

12 December 2020

Recombination in the alphaherpesvirus bovine herpesvirus 1.

1 reference

12 December 2020

Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

1 reference

12 December 2020

Analysing recombination in nucleotide sequences

1 reference

12 December 2020

The emergence of influenza A H7N9 in human beings 16 years after influenza A H5N1: a tale of two cities

1 reference

12 December 2020

Evidence that the UL84 gene product of human cytomegalovirus is essential for promoting oriLyt-dependent DNA replication and formation of replication compartments in cotransfection assays

1 reference

12 December 2020

Pervasive genomic recombination of HIV-1 in vivo

1 reference

12 December 2020

Analyzing the mosaic structure of genes

1 reference

12 December 2020

Guidelines for identifying homologous recombination events in influenza A virus

1 reference

12 December 2020

Viral replication is enhanced by an HIV-1 intersubtype recombination-derived Vpu protein.

1 reference

12 December 2020

Variation in the analysis of positively selected sites using nonsynonymous/synonymous rate ratios: an example using influenza virus

1 reference

12 December 2020

The effect of recombination on the accuracy of phylogeny estimation

1 reference

12 December 2020

Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

1 reference

12 December 2020

Retrovirus recombination depends on the length of sequence identity and is not error prone

1 reference

12 December 2020

LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters

1 reference

12 December 2020

Chronic HIV-1 infection frequently fails to protect against superinfection

1 reference

12 December 2020

The role of DNA repair in herpesvirus pathogenesis

1 reference

12 December 2020

Assessing population structure: F(ST) and related measures

1 reference

12 December 2020

Computer programs and methodologies for the simulation of DNA sequence data with recombination

1 reference

12 December 2020

10.1016/J.MEEGID.2014.12.022

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25541518%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PMC publication ID

7106159

0 references

1 reference

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