Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q38671681)
Watch
English
A permutation-based non-parametric analysis of CRISPR screen data.
scientific article published on 19 July 2017
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
title
A permutation-based non-parametric analysis of CRISPR screen data
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
main subject
CRISPR
0 references
author
Gaoxiang Jia
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
Guanghua Xiao
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
author name string
Xinlei Wang
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
language of work or name
English
0 references
publication date
19 July 2017
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
published in
BMC Genomics
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
volume
18
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
page(s)
545
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
describes a project that uses
DESeq2
object named as
DESeq
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
edgeR
object named as
edgeR
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
A Genome-wide CRISPR Screen in Toxoplasma Identifies Essential Apicomplexan Genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Design, execution, and analysis of pooled in vitro CRISPR/Cas9 screens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Systematic comparison of CRISPR/Cas9 and RNAi screens for essential genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
BAGEL: a computational framework for identifying essential genes from pooled library screens.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
High-Resolution CRISPR Screens Reveal Fitness Genes and Genotype-Specific Cancer Liabilities.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Off-target Effects in CRISPR/Cas9-mediated Genome Engineering
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Identification and characterization of essential genes in the human genome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Sequence determinants of improved CRISPR sgRNA design
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
High-throughput functional genomics using CRISPR-Cas9.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Target specificity of the CRISPR-Cas9 system.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
HiTSelect: a comprehensive tool for high-complexity-pooled screen analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Differential meta-analysis of RNA-seq data from multiple studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Genome-scale CRISPR-Cas9 knockout screening in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Genetic screens in human cells using the CRISPR-Cas9 system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
VARIABLE SELECTION FOR SPARSE DIRICHLET-MULTINOMIAL REGRESSION WITH AN APPLICATION TO MICROBIOME DATA ANALYSIS.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Highly parallel identification of essential genes in cancer cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
6 September 2017
Modeling overdispersion heterogeneity in differential expression analysis using mixtures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
14 September 2017
Comparison of software packages for detecting differential expression in RNA-seq studies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
23 June 2018
Overdispersion in allelic counts and θ-correction in forensic genetics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
31 August 2018
A probability-based approach for the analysis of large-scale RNAi screens.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
31 August 2018
False discovery rate, sensitivity and sample size for microarray studies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5518132
retrieved
31 August 2018
Identifiers
DOI
10.1186/S12864-017-3938-5
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
PMC publication ID
5518132
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
PubMed publication ID
28724352
1 reference
stated in
Europe PubMed Central
PMC publication ID
5518132
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28724352%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
