(Q40917744)

24 September 2017

title

The Root of Flowering Plants and Total Evidence (English)

1 reference

24 September 2017

3

D Cavalieri

1 reference

24 September 2017

5

Peter Lockhart

1 reference

24 September 2017

V V Goremykin

1

1 reference

24 September 2017

S V Nikiforova

series ordinal

2

1 reference

24 September 2017

M Pindo

series ordinal

4

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24 September 2017

publication date

20 May 2015

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24 September 2017

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24 September 2017

volume

64

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24 September 2017

issue

5

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24 September 2017

page(s)

879-891

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Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.

24 September 2017

cites work

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Covarion structure in plastid genome evolution: a new statistical test

21 January 2018

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

21 January 2018

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The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms

21 January 2018

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Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies

21 January 2018

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Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Overly simplistic substitution models obscure green plant phylogeny.

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

A method for inferring the rate of evolution of homologous characters that can potentially improve phylogenetic inference, resolve deep divergence and correct systematic biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenomics and the reconstruction of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Another look at the root of the angiosperms reveals a familiar tale

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

How many genes should a systematist sample? Conflicting insights from a phylogenomic matrix characterized by replicated incongruence

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Experimental design criteria in phylogenetics: where to add taxa

21 January 2018

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenetic information and experimental design in molecular systematics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Removal of noisy characters from chloroplast genome-scale data suggests revision of phylogenetic placements of Amborella and Ceratophyllum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Automated removal of noisy data in phylogenomic analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

The evolutionary root of flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogeny of 33 ribosomal and six other proteins encoded in an ancient gene cluster that is conserved across prokaryotic genomes: influence of excluding poorly alignable sites from analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Angiosperm phylogeny based on matK sequence information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Mixture models of nucleotide sequence evolution that account for heterogeneity in the substitution process across sites and across lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Ancestral polyploidy in seed plants and angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

A new method for calculating evolutionary substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Origin of land plants revisited in the light of sequence contamination and missing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

21 January 2018

A tale of two processes.

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Heterotachy and tree building: a case study with plastids and eubacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

The root of the tree of life in the light of the covarion model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Identifiability and inference of non-parametric rates-across-sites models on large-scale phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Progress with methods for constructing evolutionary trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Resolving phylogenetic signal from noise when divergence is rapid: a new look at the old problem of echinoderm class relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Reconstructing the Basal Angiosperm Phylogeny: Evaluating Information Content of Mitochondrial Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Angiosperm phylogeny inferred from sequences of four mitochondrial genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Molecular phylogenetics of the allodapine bee genus Braunsapis: A-T bias and heterogeneous substitution parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Angiosperm phylogeny: 17 genes, 640 taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Confidence in evolutionary trees from biological sequence data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

A frequency-dependent significance test for parsimony

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

No magic pill for phylogenetic error

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Profiling phylogenetic informativeness

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Measuring the fit of sequence data to phylogenetic model: allowing for missing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

The root of the angiosperms revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Detecting and Overcoming Systematic Errors in Genome-Scale Phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

Ribosomal RNA trees misleading?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV028

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYV028

1 reference

24 September 2017

1 reference