(Q42132377)

English

Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence

scientific article published on 24 September 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Nucleosome positioning and kinetics near transcription-start-site barriers are controlled by interplay between active remodeling and DNA sequence (English)

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

author name string

Jyotsana J Parmar

1

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

John F Marko

2

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Ranjith Padinhateeri

3

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

publication date

24 September 2013

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

42

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

1

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

128-136

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

copyright license

Creative Commons Attribution 3.0 Unported

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Kinetics and thermodynamics of phenotype: unwinding and rewinding the nucleosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

A map of nucleosome positions in yeast at base-pair resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Manipulating nucleosome disfavoring sequences allows fine-tune regulation of gene expression in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution

1 reference

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29 May 2018

Nucleosome stability dramatically impacts the targeting of somatic hypermutation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Genome-wide "re"-modeling of nucleosome positions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome

1 reference

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29 May 2018

Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Nucleosome positioning in a model of active chromatin remodeling enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

An effect of DNA sequence on nucleosome occupancy and removal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up- and downstream of transcription start sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Nucleosome positioning by genomic excluding-energy barriers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

A novel strategy of transcription regulation by intragenic nucleosome ordering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

The DNA-encoded nucleosome organization of a eukaryotic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Chromatin challenges during DNA replication and repair

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Effect of force on mononucleosomal dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Evolutionary turnover of mammalian transcription start sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Chromatin remodeling by nucleosome disassembly in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Dynamics of molecular motors and polymer translocation with sequence heterogeneity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Sequence periodicities in chicken nucleosome core DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Stepwise assembly of chromatin during DNA replication in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

29 May 2018

Nucleosome switches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

17 August 2018

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874171

17 August 2018

Thermodynamics of intragenic nucleosome ordering

1 reference

https://pubmed.ncbi.nlm.nih.gov/24068556

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Illuminating eukaryotic transcription start sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/24068556

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleosome positioning and nucleosome stacking: two faces of the same coin

1 reference

https://pubmed.ncbi.nlm.nih.gov/24068556

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic Control of Nucleosome Displacement by ISWI/ACF Chromatin Remodelers

1 reference

https://pubmed.ncbi.nlm.nih.gov/24068556

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKT854

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 October 2017

ResearchGate publication ID

0 references

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