(Q44030466)

29 November 2017

title

Conformational landscape of the HIV-V3 hairpin loop from all-atom free-energy simulations (English)

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29 November 2017

2

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29 November 2017

Abhinav Verma

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language of work or name

English

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publication date

1 March 2008

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Journal of Chemical Physics

29 November 2017

published in

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29 November 2017

volume

128

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29 November 2017

issue

10

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29 November 2017

page(s)

105103

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Protein structure prediction and structural genomics

29 November 2017

cites work

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Recent improvements in prediction of protein structure by global optimization of a potential energy function.

21 January 2018

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Protein structure prediction in 2002.

21 January 2018

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In Silico Folding of a Three Helix Protein and Characterization of Its Free-Energy Landscape in an All-Atom Force Field

21 January 2018

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Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

21 January 2018

1 reference

Absolute comparison of simulated and experimental protein-folding dynamics

21 January 2018

1 reference

Principles that govern the folding of protein chains

21 January 2018

1 reference

An all-atom force field for tertiary structure prediction of helical proteins

21 January 2018

1 reference

All-atom folding of the three-helix HIV accessory protein with an adaptive parallel tempering method.

21 January 2018

1 reference

An evolutionary strategy for all-atom folding of the 60-amino-acid bacterial ribosomal protein l20.

21 January 2018

1 reference

Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field

21 January 2018

1 reference

Alternative conformations of HIV-1 V3 loops mimic beta hairpins in chemokines, suggesting a mechanism for coreceptor selectivity

21 January 2018

1 reference

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

21 January 2018

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Solvation energy in protein folding and binding

21 January 2018

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Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

21 January 2018

1 reference

Comparison of stochastic optimization methods for all-atom folding of the Trp-Cage protein.

21 January 2018

1 reference

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

1 reference

MOLMOL: a program for display and analysis of macromolecular structures

21 January 2018

1 reference

Theory of protein folding: the energy landscape perspective

21 January 2018

1 reference

From Levinthal to pathways to funnels

21 January 2018

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Picking the lock with a hairpin. Did HIV-1 learn the art from chemokines?

21 January 2018

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Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody

21 January 2018

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Global Optimization by Basin-Hopping and the Lowest Energy Structures of Lennard-Jones Clusters Containing up to 110 Atoms

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.2844788

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29 November 2017

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