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The 5BSL3.2 Functional RNA Domain Connects Distant Regions in the Hepatitis C Virus Genome
scientific article published on 31 October 2017
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scholarly article
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Europe PubMed Central
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5671509
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6 December 2017
title
The 5BSL3.2 Functional RNA Domain Connects Distant Regions in the Hepatitis C Virus Genome
(English)
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Europe PubMed Central
PMCID
5671509
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6 December 2017
main subject
Hepatitis C virus
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author
Alfredo Berzal-Herranz
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2
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Europe PubMed Central
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5671509
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 June 2020
author name string
Cristina Romero-López
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1
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Europe PubMed Central
PMCID
5671509
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
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10 June 2020
publication date
31 October 2017
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Europe PubMed Central
PMCID
5671509
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6 December 2017
published in
Frontiers in Microbiology
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Europe PubMed Central
PMCID
5671509
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 June 2020
volume
8
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Europe PubMed Central
PMCID
5671509
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
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10 June 2020
page(s)
2093
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Europe PubMed Central
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5671509
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
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10 June 2020
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Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo
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25 May 2018
Hepatitis C virus internal ribosome entry site-mediated translation is stimulated by cis-acting RNA elements and trans-acting viral factors
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25 May 2018
A Hepatitis C Virus cis-Acting Replication Element Forms a Long-Range RNA-RNA Interaction with Upstream RNA Sequences in NS5B
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25 May 2018
Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2.
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25 May 2018
let-7 regulates self renewal and tumorigenicity of breast cancer cells
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25 May 2018
3' RNA Elements in Hepatitis C Virus Replication: Kissing Partners and Long Poly(U)
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25 May 2018
DDX3 DEAD-box RNA helicase is required for hepatitis C virus RNA replication
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25 May 2018
Cellular cofactors affecting hepatitis C virus infection and replication
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25 May 2018
Genetic diversity of the hepatitis C virus: impact and issues in the antiviral therapy
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25 May 2018
Evidence for a functional RNA element in the hepatitis C virus core gene
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25 May 2018
The Hepatitis C Virus RNA 3'-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site
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25 May 2018
Analysis of hepatitis C virus RNA dimerization and core-RNA interactions
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25 May 2018
The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase
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PubMed Central
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25 May 2018
Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
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25 May 2018
Inhibition of hepatitis C virus replication by pol III-directed overexpression of RNA decoys corresponding to stem-loop structures in the NS5B coding region
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25 May 2018
Hepatitis C virus nonstructural protein 5A (NS5A) is an RNA-binding protein
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25 May 2018
Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication
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25 May 2018
Riboproteomics of the hepatitis C virus internal ribosomal entry site
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25 May 2018
cis-acting RNA signals in the NS5B C-terminal coding sequence of the hepatitis C virus genome
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25 May 2018
Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.
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25 May 2018
Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence
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25 May 2018
Reduced expression of the let-7 microRNAs in human lung cancers in association with shortened postoperative survival
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25 May 2018
The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro
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25 May 2018
A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication
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25 May 2018
5'- and 3'-noncoding regions in flavivirus RNA.
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25 May 2018
Membrane association of hepatitis C virus nonstructural proteins and identification of the membrane alteration that harbors the viral replication complex
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25 May 2018
3' nontranslated RNA signals required for replication of hepatitis C virus RNA
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25 May 2018
Course and outcome of hepatitis C
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25 May 2018
Domains on the hepatitis C virus internal ribosome entry site for 40s subunit binding
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25 May 2018
Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Expression of hepatitis C virus proteins induces distinct membrane alterations including a candidate viral replication complex
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Messenger-RNA-binding proteins and the messages they carry
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25 May 2018
Genetic Analysis of Sequences in the 3' Nontranslated Region of Hepatitis C Virus That Are Important for RNA Replication
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
A conserved RNA structure within the HCV IRES eIF3-binding site
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Evidence for a new hepatitis C virus antigen encoded in an overlapping reading frame
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Replication of hepatitis C virus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Automatic detection of conserved RNA structure elements in complete RNA virus genomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Biochemical properties of hepatitis C virus NS5B RNA-dependent RNA polymerase and identification of amino acid sequence motifs essential for enzymatic activity
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Unique features of internal initiation of hepatitis C virus RNA translation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Characterization of RNA binding activity and RNA helicase activity of the hepatitis C virus NS3 protein
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Structure of the 3' terminus of the hepatitis C virus genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
A novel effector domain from the RNA-binding protein TLS or EWS is required for oncogenic transformation by CHOP
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25 May 2018
Expression and identification of hepatitis C virus polyprotein cleavage products
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25 May 2018
Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Sequence analysis of the 5' noncoding region of hepatitis C virus
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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25 May 2018
Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution
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25 May 2018
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25 May 2018
Sofosbuvir with pegylated interferon alfa-2a and ribavirin for treatment-naive patients with hepatitis C genotype-1 infection (ATOMIC): an open-label, randomised, multicentre phase 2 trial
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15 August 2018
The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome
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15 August 2018
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15 August 2018
Determinants of hepatitis C translational initiation in vitro, in cultured cells and mice
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5671509
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15 August 2018
The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold
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15 August 2018
Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome.
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15 August 2018
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15 August 2018
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15 August 2018
The Ewing Sarcoma Protein Regulates DNA Damage-Induced Alternative Splicing
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Identifiers
DOI
10.3389/FMICB.2017.02093
1 reference
stated in
Europe PubMed Central
PMCID
5671509
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 June 2020
PMCID
5671509
1 reference
stated in
Europe PubMed Central
PMCID
5671509
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 June 2020
PubMed ID
29163393
1 reference
stated in
Europe PubMed Central
PMCID
5671509
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29163393%20AND%20SRC:MED&resulttype=core&format=json
retrieved
10 June 2020
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