(Q44965379)

English

PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

scientific article published on 7 February 2012

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scholarly article

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22 January 2020

PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth (English)

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22 January 2020

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Peter M Rogowsky

11

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22 January 2020

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Myriam Dauzat

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22 January 2020

author name string

Davide Sosso

1

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22 January 2020

Sylvie Mbelo

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22 January 2020

Vanessa Vernoud

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22 January 2020

Ghislaine Gendrot

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Annick Dedieu

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22 January 2020

Pierre Chambrier

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22 January 2020

Laure Heurtevin

8

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22 January 2020

Virginie Guyon

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Mizuki Takenaka

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22 January 2020

publication date

7 February 2012

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22 January 2020

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22 January 2020

676-691

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22 January 2020

Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis

1 reference

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29 September 2018

The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The evolution of RNA editing and pentatricopeptide repeat genes.

1 reference

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29 September 2018

An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The DYW-E-PPR protein MEF14 is required for RNA editing at site matR-1895 in mitochondria of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Nicotiana benthamiana as a production platform for artemisinin precursors

1 reference

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29 September 2018

Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Overexpression of the epidermis-specific homeodomain-leucine zipper IV transcription factor Outer Cell Layer1 in maize identifies target genes involved in lipid metabolism and cuticle biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The SLO1 PPR protein is required for RNA editing at multiple sites with similar upstream sequences in Arabidopsis mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Plant RNA editing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The mitochondrial PPR protein LOVASTATIN INSENSITIVE 1 plays regulatory roles in cytosolic and plastidial isoprenoid biosynthesis through RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Multiplex single-base extension typing to identify nuclear genes required for RNA editing in plant organelles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Analyzing real-time PCR data by the comparative C(T) method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

On the expansion of the pentatricopeptide repeat gene family in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

The process of RNA editing in plant mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Transcriptional and metabolic adjustments in ADP-glucose pyrophosphorylase-deficient bt2 maize kernels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Agrobacterium-mediated transformation of maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Genetic architecture of mitochondrial editing in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Locating proteins in the cell using TargetP, SignalP and related tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Blue native PAGE

1 reference

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29 September 2018

empty pericarp4 encodes a mitochondrion-targeted pentatricopeptide repeat protein necessary for seed development and plant growth in maize.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Miniature Seed-a Study in the Development of a Defective Caryopsis in Maize

1 reference

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29 September 2018

REDIdb: the RNA editing database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

1 reference

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29 September 2018

GROWTH RESPONSE OF SINGLE-GENE DWARF MUTANTS IN MAIZE TO GIBBERELLIC ACID.

1 reference

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29 September 2018

Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Organization and variability of the maize genome

1 reference

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29 September 2018

Steady-state transposon mutagenesis in inbred maize

1 reference

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29 September 2018

RNA immunoprecipitation and microarray analysis show a chloroplast Pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

1 reference

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29 September 2018

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

1 reference

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29 September 2018

TPR proteins: the versatile helix

1 reference

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29 September 2018

Discrete mutations in the presequence of potato formate dehydrogenase inhibit the in vivo targeting of GFP fusions into mitochondria

1 reference

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29 September 2018

A chloroplast‐localized PPR protein required for plastid ribosome accumulation

1 reference

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29 September 2018

The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana

1 reference

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29 September 2018

Retracted: An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virus

1 reference

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29 September 2018

Differential expression of alternative oxidase genes in maize mitochondrial mutants.

1 reference

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29 September 2018

The Miniature1 Seed Locus of Maize Encodes a Cell Wall Invertase Required for Normal Development of Endosperm and Maternal Cells in the Pedicel.

1 reference

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29 September 2018

GATEWAY vectors for Agrobacterium-mediated plant transformation

1 reference

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29 September 2018

rgf1, a mutation reducing grain filling in maize through effects on basal endosperm and pedicel development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

1 reference

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29 September 2018

The PPR motif - a TPR-related motif prevalent in plant organellar proteins

1 reference

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29 September 2018

RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs

1 reference

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29 September 2018

Plant mitochondrial RNA editing

1 reference

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29 September 2018

High efficiency transformation of maize (Zea mays L.) mediated by Agrobacterium tumefaciens

1 reference

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29 September 2018

The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

Lack of mitochondrial and nuclear-encoded subunits of complex I and alteration of the respiratory chain in Nicotiana sylvestris mitochondrial deletion mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

29 September 2018

A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine

1 reference

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29 September 2018

Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA.

1 reference

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29 September 2018

RNA editing in plant mitochondria

1 reference

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29 September 2018

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

1 December 2018

A hypothesis on the identification of the editing enzyme in plant organelles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315240

1 December 2018

Reduction of 2,3,5-triphenyltetrazolium chloride by the KCN-insensitive, salicylhydroxamic acid-sensitive alternative respiratory pathway of mitochondria from cultured grapevine cells

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Refinement of the triphenyl tetrazolium chloride method of determining cold injury

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PPR proteins network as site-specific RNA editing factors in plant organelles

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation of an efficient actin promoter for use in rice transformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA editing in plant mitochondria: assays and biochemical approaches

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An alternative oxidase monoclonal antibody recognises a highly conserved sequence among alternative oxidase subunits

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transgene behaviour in populations of rice plants transformed using a new dual binary vector system: pGreen/pSoup

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput linkage analysis of Mutator insertion sites in maize

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/22319053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.111.091074

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22319053%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

0 references

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22319053%20AND%20SRC:MED&resulttype=core&format=json

22 January 2020

ResearchGate publication ID

0 references

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