(Q46488833)

22 December 2017

title

Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time (English)

1 reference

22 December 2017

3

Matthew W Hahn

1 reference

22 December 2017

author name string

Fábio K Mendes

series ordinal

1

1 reference

22 December 2017

Yoonsoo Hahn

series ordinal

2

1 reference

22 December 2017

publication date

15 September 2016

1 reference

22 December 2017

Molecular Biology and Evolution

published in

1 reference

22 December 2017

volume

33

1 reference

22 December 2017

issue

12

1 reference

22 December 2017

page(s)

3299-3307

1 reference

22 December 2017

Hemiplasy: a new term in the lexicon of phylogenetics.

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Extensive parallelism in protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

The genomic substrate for adaptive radiation in African cichlid fish

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Evidence for an ancient adaptive episode of convergent molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Evolutionary switch and genetic convergence on rbcL following the evolution of C4 photosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Phylogenomics reveals extensive reticulate evolution in Xiphophorus fishes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Community-wide convergent evolution in insect adaptation to toxic cardenolides by substitutions in the Na,K-ATPase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

BEAST: Bayesian evolutionary analysis by sampling trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Constraint shapes convergence in tetrodotoxin-resistant sodium channels of snakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Convergent evolution of the genomes of marine mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Nonadaptive Amino Acid Convergence Rates Decrease over Time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Irrational exuberance for resolved species trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Whole-genome analyses resolve early branches in the tree of life of modern birds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

The UCSC Table Browser data retrieval tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

PoMo: An Allele Frequency-Based Approach for Species Tree Estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

How reticulated are species?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Convergence in pigmentation at multiple levels: mutations, genes and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Epistasis and the Dynamics of Reversion in Molecular Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Gene Tree Discordance Causes Apparent Substitution Rate Variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

EggLib: processing, analysis and simulation tools for population genetics and genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Fitness conferred by replaced amino acids declines with time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Microevolutionary processes generate phylogenomic discordance at ancient divergences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Genome-wide signatures of convergent evolution in echolocating mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Amino acid coevolution induces an evolutionary Stokes shift.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Sequence space and the ongoing expansion of the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Repeated elevational transitions in hemoglobin function during the evolution of Andean hummingbirds.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Unified modeling of gene duplication, loss, and coalescence using a locus tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Frequent and widespread parallel evolution of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Insights into hominid evolution from the gorilla genome sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Contingency and entrenchment in protein evolution under purifying selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Does Gene Tree Discordance Explain the Mismatch between Macroevolutionary Models and Empirical Patterns of Tree Shape and Branching Times?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

The genetic causes of convergent evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Causes of molecular convergence and parallelism in protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Reconciliation with non-binary species trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

The BPP program for species tree estimation and species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Comparative genomics reveals insights into avian genome evolution and adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Detection of convergent and parallel evolution at the amino acid sequence level

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Parallel molecular evolution in an herbivore community

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

No genome-wide protein sequence convergence for echolocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSW197

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSW197

1 reference

22 December 2017

1 reference

22 December 2017