(Q47115752)

http://europepmc.org/abstract/PMC/5701008

8 January 2018

title

Genome-wide identification and differential analysis of translational initiation (English)

1 reference

http://europepmc.org/abstract/PMC/5701008

8 January 2018

author

Tao Liu

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Peng Zhang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Yunfei Wang

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Erik A Ehli

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Tuan Nguyen

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

David H Hawke

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Zhe Ji

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Dandan He

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Yi Xu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Jiakai Hou

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Bih-Fang Pan

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Christel M Davis

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Lin Tan

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Feng Zhou

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Jian Hu

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Yonghao Yu

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Xi Chen

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Jeffrey M Rosen

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Yiwen Chen

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

English

0 references

publication date

23 November 2017

1 reference

http://europepmc.org/abstract/PMC/5701008

8 January 2018

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

1749

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

10 June 2020

copyright license

start time

23 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-017-01981-8

0 references

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Translation from the 5' untranslated region shapes the integrated stress response

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

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23 May 2018

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A micropeptide encoded by a putative long noncoding RNA regulates muscle performance

23 May 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 May 2018

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Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning

23 May 2018

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Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation

23 May 2018

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Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

23 May 2018

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Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

23 May 2018

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Translation inhibitors cause abnormalities in ribosome profiling experiments

23 May 2018

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Translational control in synaptic plasticity and cognitive dysfunction

23 May 2018

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Amino acid starvation has opposite effects on mitochondrial and cytosolic protein synthesis

23 May 2018

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23 May 2018

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N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men

23 May 2018

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The evolution of lncRNA repertoires and expression patterns in tetrapods

23 May 2018

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Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

23 May 2018

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23 May 2018

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23 May 2018

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23 May 2018

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23 May 2018

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The translational landscape of the mammalian cell cycle

23 May 2018

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Assessing gene-level translational control from ribosome profiling

23 May 2018

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Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames

23 May 2018

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Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

23 May 2018

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The RNA degradation pathway regulates the function of GAS5 a non-coding RNA in mammalian cells

23 May 2018

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Peptidomic discovery of short open reading frame-encoded peptides in human cells.

23 May 2018

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Introns in UTRs: why we should stop ignoring them

23 May 2018

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STAR: ultrafast universal RNA-seq aligner

23 May 2018

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Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads

23 May 2018

1 reference

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Site identification in high-throughput RNA-protein interaction data

23 May 2018

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

23 May 2018

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Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

23 May 2018

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Genome regulation by long noncoding RNAs.

23 May 2018

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Observation of dually decoded regions of the human genome using ribosome profiling data

23 May 2018

1 reference

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

23 May 2018

1 reference

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Genome analysis reveals interplay between 5'UTR introns and nuclear mRNA export for secretory and mitochondrial genes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Estimation of alternative splicing isoform frequencies from RNA-Seq data

23 May 2018

1 reference

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Identification of differential translation in genome wide studies

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Translational regulation of gene expression during conditions of cell stress

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Translational control in cancer.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

Genome-wide functional analysis of human 5' untranslated region introns

23 May 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

23 May 2018

1 reference

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Length of the ORF, position of the first AUG and the Kozak motif are important factors in potential dual-coding transcripts.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

The mechanism of eukaryotic translation initiation and principles of its regulation

23 May 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 May 2018

1 reference

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Statistical inferences for isoform expression in RNA-Seq

23 May 2018

1 reference

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Regulation of translation initiation in eukaryotes: mechanisms and biological targets

23 May 2018

1 reference

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Translation matters: protein synthesis defects in inherited disease

23 May 2018

1 reference

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Diversity of translation start sites may define increased complexity of the human short ORFeome

23 May 2018

1 reference

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Diamond-Blackfan anemia: erythropoiesis lost in translation

23 May 2018

1 reference

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Gene ontology: tool for the unification of biology

23 May 2018

1 reference

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Translational regulation in development.

23 May 2018

1 reference

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Translation initiation at non-AUG triplets in mammalian cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701008

anota: Analysis of differential translation in genome-wide studies

23 May 2018

1 reference

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A new look at the statistical model identification

15 August 2018

1 reference

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Estimating the Dimension of a Model

21 January 2018

1 reference

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Whole-exome sequencing for finding de novo mutations in sporadic mental retardation

21 January 2018

1 reference

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The role of alternative translation start sites in the generation of human protein diversity

21 January 2018

1 reference

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10.1038/S41467-017-01981-8

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

0 references

release_h5govr2nprg7ndhktpk7p52sdm

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/h5govr2nprg7ndhktpk7p52sdm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29170441%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

29170441

1 reference