(Q47327079)

19 June 2018

title

Annotation-free quantification of RNA splicing using LeafCutter (English)

1 reference

19 June 2018

author

Yang I Li

1

1 reference

http://europepmc.org/abstract/MED/29229983

14 January 2018

David A Knowles

object named as

David A Knowles

2

0 references

Hae Kyung Im

object named as

Hae Kyung Im

6

0 references

Jonathan K. Pritchard

7

object named as

Jonathan K Pritchard

1 reference

19 June 2018

author name string

Jack Humphrey

3

1 reference

19 June 2018

Alvaro N Barbeira

4

1 reference

19 June 2018

Scott P Dickinson

5

1 reference

19 June 2018

language of work or name

English

0 references

publication date

11 December 2017

1 reference

19 June 2018

published in

Nature Genetics

1 reference

19 June 2018

volume

50

1 reference

19 June 2018

issue

1

1 reference

19 June 2018

page(s)

151-158

1 reference

19 June 2018

describes a project that uses

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5742080

exact match

https://scigraph.springernature.com/pub.10.1038/s41588-017-0004-9

0 references

cites work

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1 reference

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Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues

19 June 2018

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Widespread Shortening of 3' Untranslated Regions and Increased Exon Inclusion Are Evolutionarily Conserved Features of Innate Immune Responses to Infection.

19 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

RNA splicing is a primary link between genetic variation and disease

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

A new view of transcriptome complexity and regulation through the lens of local splicing variations

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Fast and efficient QTL mapper for thousands of molecular phenotypes.

19 June 2018

1 reference

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Discover hidden splicing variations by mapping personal transcriptomes to personal genomes.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Alternative Splicing QTLs in European and African Populations

19 June 2018

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19 June 2018

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A gene-based association method for mapping traits using reference transcriptome data

19 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

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19 June 2018

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rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

19 June 2018

1 reference

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Identification of genetic variants associated with alternative splicing using sQTLseekeR.

19 June 2018

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Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

19 June 2018

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Transcriptome and genome sequencing uncovers functional variation in humans

19 June 2018

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Drift and conservation of differential exon usage across tissues in primate species

19 June 2018

1 reference

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GLiMMPS: robust statistical model for regulatory variation of alternative splicing using RNA-seq data

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds.

19 June 2018

1 reference

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EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Differential analysis of gene regulation at transcript resolution with RNA-seq

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

STAR: ultrafast universal RNA-seq aligner

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Detecting differential usage of exons from RNA-seq data

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Analysis and design of RNA sequencing experiments for identifying isoform regulation

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Origins, evolution, and phenotypic impact of new genes.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Association of CD40 with rheumatoid arthritis confirmed in a large UK case-control study

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Alternative splicing and genome complexity

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Cellular source and mechanisms of high transcriptome complexity in the mammalian testis

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

The evolutionary landscape of alternative splicing in vertebrate species

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5742080

Improving the value of public RNA-seq expression data by phenotype prediction.

2 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29229983

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29229983

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/S41588-017-0004-9

1 reference

19 June 2018

PMCID

5742080

1 reference

19 June 2018

PubMed ID

29229983

1 reference

19 June 2018