(Q47408673)

15 January 2018

title

CHO-Omics Review: The Impact of Current and Emerging Technologies on Chinese Hamster Ovary Based Bioproduction (English)

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15 January 2018

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Gino Stolfa

1

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15 January 2018

Matthew T Smonskey

2

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15 January 2018

Ryan Boniface

3

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15 January 2018

Anna-Barbara Hachmann

4

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15 January 2018

Paul Gulde

5

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15 January 2018

Atul D Joshi

6

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15 January 2018

Anson P Pierce

7

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15 January 2018

Scott J Jacobia

8

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15 January 2018

Andrew Campbell

9

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15 January 2018

publication date

26 October 2017

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15 January 2018

published in

Biotechnology Journal

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15 January 2018

The next-generation sequencing revolution and its impact on genomics

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Accelerating genome editing in CHO cells using CRISPR Cas9 and CRISPy, a web-based target finding tool

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Cell line profiling to improve monoclonal antibody production.

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Silencing of transgene transcription precedes methylation of promoter DNA and histone H3 lysine 9.

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A mechanistic understanding of production instability in CHO cell lines expressing recombinant monoclonal antibodies

21 January 2018

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Promoter methylation and transgene copy numbers predict unstable protein production in recombinant Chinese hamster ovary cell lines

21 January 2018

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Unstable expression of recombinant antibody during long-term culture of CHO cells is accompanied by histone H3 hypoacetylation.

21 January 2018

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Evaluating regulatory elements of human cytomegalovirus major immediate early gene for enhancing transgene expression levels in CHO K1 and HEK293 cells

21 January 2018

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The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.

21 January 2018

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Establishment of a CpG island microarray for analyses of genome-wide DNA methylation in Chinese hamster ovary cells

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Mechanisms underlying epigenetic and transcriptional heterogeneity in Chinese hamster ovary (CHO) cell lines

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Accumulative gene integration into a pre-determined site using Cre/loxP.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Recombinase-mediated cassette exchange (RMCE): traditional concepts and current challenges

21 January 2018

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Strategies to insulate lentiviral vector-expressed transgenes

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Safer, silencing-resistant lentiviral vectors: optimization of the ubiquitous chromatin-opening element through elimination of aberrant splicing

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Characterizing DNA methylation alterations from The Cancer Genome Atlas

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

An automated RNA-Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Transcriptomic variation between different Chinese hamster ovary cell lines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Quantitative real-time RT-PCR--a perspective.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

The use of 'Omics technology to rationally improve industrial mammalian cell line performance

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Transcriptomic changes in CHO cells after adaptation to suspension growth in protein-free medium analysed by a species-specific microarray

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Engineering CHO cell growth and recombinant protein productivity by overexpression of miR-7.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

The art of CHO cell engineering: A comprehensive retrospect and future perspectives

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

CHO microRNA engineering is growing up: recent successes and future challenges

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

MicroRNAs: tiny targets for engineering CHO cell phenotypes?

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

High-Throughput Lipidomic and Transcriptomic Analysis To Compare SP2/0, CHO, and HEK-293 Mammalian Cell Lines

21 January 2018

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ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data

21 January 2018

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Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling

21 January 2018

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The BioMart community portal: an innovative alternative to large, centralized data repositories

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Global insights into the Chinese hamster and CHO cell transcriptomes.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Predicting cell-specific productivity from CHO gene expression.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Large scale microarray profiling and coexpression network analysis of CHO cells identifies transcriptional modules associated with growth and productivity

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Transcriptomic analysis of clonal growth rate variation during CHO cell line development

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Dynamic mRNA and miRNA profiling of CHO-K1 suspension cell cultures.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Review of the literature examining the correlation among DNA microarray technologies

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Pathways to the analysis of microarray data

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Correlation between protein and mRNA abundance in yeast

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

LC-MS-based metabolic characterization of high monoclonal antibody-producing Chinese hamster ovary cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Quantitative definition and monitoring of the host cell protein proteome using iTRAQ - a study of an industrial mAb producing CHO-S cell line

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Quantitative analysis of the supernatant from host and transfected CHO cells using iTRAQ 8-plex technique

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Proteomic differences in recombinant CHO cells producing two similar antibody fragments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

2D-DIGE screening of high-productive CHO cells under glucose limitation--basic changes in the proteome equipment and hints for epigenetic effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Proteomic analysis of Chinese hamster ovary cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Simple capillary electrophoresis-mass spectrometry method for complex glycan analysis using a flow-through microvial interface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Analysis of Monoclonal Antibody Sequence and Post-translational Modifications by Time-controlled Proteolysis and Tandem Mass Spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Glycan analysis of therapeutic glycoproteins

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts.

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolomics: quantification of intracellular metabolite dynamics

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolomics – the link between genotypes and phenotypes

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolomics profiling of extracellular metabolites in CHO-K1 cells cultured in different types of growth media

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

A study of monoclonal antibody-producing CHO cell lines: what makes a stable high producer?

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

A single nutrient feed supports both chemically defined NS0 and CHO fed-batch processes: Improved productivity and lactate metabolism

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolic flux analysis of CHO cell metabolism in the late non-growth phase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolic analysis of antibody producing CHO cells in fed-batch production

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Compartment-specific metabolomics for CHO reveals that ATP pools in mitochondria are much lower than in cytosol.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

NMR-based metabolomics of mammalian cell and tissue cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Unraveling biochemical pathways affected by mitochondrial dysfunctions using metabolomic approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Optimizing eukaryotic cell hosts for protein production through systems biotechnology and genome-scale modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Combining mechanistic and data-driven approaches to gain process knowledge on the control of the metabolic shift to lactate uptake in a fed-batch CHO process.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

RETRACTED: Poly-pathway model, a novel approach to simulate multiple metabolic states by reaction network-based model - Application to amino acid depletion in CHO cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A Markov chain model for N-linked protein glycosylation--towards a low-parameter tool for model-driven glycoengineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Segmented linear modeling of CHO fed-batch culture and its application to large scale production.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A hybrid approach identifies metabolic signatures of high-producers for chinese hamster ovary clone selection and process optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

High-throughput IgG Fc N-glycosylation profiling by mass spectrometry of glycopeptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Identification of cell culture conditions to control N-glycosylation site-occupancy of recombinant glycoproteins expressed in CHO cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Systems glycobiology for glycoengineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Challenges of glycosylation analysis and control: an integrated approach to producing optimal and consistent therapeutic drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Optimal and consistent protein glycosylation in mammalian cell culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Determination of glycosylation sites and site-specific heterogeneity in glycoproteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Characterization of therapeutic antibodies and related products.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Glycan labeling strategies and their use in identification and quantification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Multiplexing N-glycan analysis by DNA analyzer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

The sugar code: functional lectinomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Lectins: a primer for histochemists and cell biologists.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Separation-based glycoprofiling approaches using fluorescent labels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

GlycoBase and autoGU: resources for interpreting HPLC-glycan data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Databases and Associated Tools for Glycomics and Glycoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

KEGG as a glycome informatics resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Combined in silico modeling and metabolomics analysis to characterize fed-batch CHO cell culture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A multi-omics analysis of recombinant protein production in Hek293 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A community-driven global reconstruction of human metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

fastGapFill: efficient gap filling in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Genome-scale modeling of the protein secretory machinery in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Applications of genome-scale metabolic network model in metabolic engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Using Genome-scale Models to Predict Biological Capabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Metabolic analysis of the synthesis of high levels of intracellular human SOD in Saccharomyces cerevisiae rhSOD 2060 411 SGA122.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Analysis of omics data with genome-scale models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Quantitative trait loci mapping of the mouse plasma proteome (pQTL)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

mQTL.NMR: an integrated suite for genetic mapping of quantitative variations of (1)H NMR-based metabolic profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Dynamic metabolic models of CHO cell cultures through minimal sets of elementary flux modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Using Gene Essentiality and Synthetic Lethality Information to Correct Yeast and CHO Cell Genome-Scale Models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

An omics approach to rational feed: Enhancing growth in CHO cultures with NMR metabolomics and 2D-DIGE proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Analysis of genetic variation and potential applications in genome-scale metabolic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Flux balance analysis of CHO cells before and after a metabolic switch from lactate production to consumption

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Chinese hamster genome sequenced from sorted chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

The GalNAc-type O-Glycoproteome of CHO cells characterized by the SimpleCell strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Engineered CHO cells for production of diverse, homogeneous glycoproteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Probing isoform-specific functions of polypeptide GalNAc-transferases using zinc finger nuclease glycoengineered SimpleCells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Enhanced mass spectrometric mapping of the human GalNAc-type O-glycoproteome with SimpleCells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

High-throughput profiling of nucleotides and nucleotide sugars to evaluate their impact on antibody N-glycosylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Systems Glycobiology: Integrating Glycogenomics, Glycoproteomics, Glycomics, and Other 'Omics Data Sets to Characterize Cellular Glycosylation Processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

ST3Gal-4 is the primary sialyltransferase regulating the synthesis of E-, P-, and L-selectin ligands on human myeloid leukocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A framework to quantify karyotype variation associated with CHO cell line instability at a single-cell level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Genome-scale CRISPR-Cas9 knockout screening in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Genetic screens in human cells using the CRISPR-Cas9 system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Genome editing using FACS enrichment of nuclease-expressing cells and indel detection by amplicon analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Quantitative feature extraction from the Chinese hamster ovary bioprocess bibliome using a novel meta-analysis workflow

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

Massively parallel digital transcriptional profiling of single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201700227

21 January 2018

Identifiers

DOI

10.1002/BIOT.201700227

1 reference

15 January 2018

1 reference

15 January 2018