(Q50042171)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

1 reference

24 December 2020

Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

biomedical investigative technique

16 March 2020

main subject

1 reference

19 September 2019

1 reference

22 October 2019

1 reference

24 December 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Redmond Ramin Shamshiri

7

1 reference

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16 March 2020

author name string

Sima Taheri

1

1 reference

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16 March 2020

Thohirah Lee Abdullah

2

1 reference

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16 March 2020

Mohamed Musa Hanafi

4

1 reference

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16 March 2020

Mahbod Sahebi

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

Parisa Azizi

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

language of work or name

English

0 references

publication date

13 February 2018

4 references

19 September 2019

22 October 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

24 December 2020

4 references

19 September 2019

22 October 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

24 December 2020

23

1 reference

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16 March 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution

16 March 2020

copyright license

3 references

19 September 2019

22 October 2019

24 December 2020

0 references

describes a project that uses

massive parallel sequencing

1 reference

Basic local alignment search tool

inferred from title

cites work

1 reference

12 December 2020

Abundance, variability and chromosomal location of microsatellites in wheat

1 reference

12 December 2020

A 300 kilobase interval genetic map of rice including 883 expressed sequences

1 reference

12 December 2020

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

12 December 2020

Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential

1 reference

12 December 2020

Strategies for microsatellite isolation: a review.

1 reference

12 December 2020

Comparative analysis of polymorphism and chromosomal location of tomato microsatellite markers isolated from different sources

1 reference

12 December 2020

Comparative analyses of potato expressed sequence tag libraries

1 reference

12 December 2020

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

1 reference

12 December 2020

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

12 December 2020

How much effort is required to isolate nuclear microsatellites from plants?

1 reference

12 December 2020

Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)

1 reference

12 December 2020

Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags

1 reference

12 December 2020

Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat

1 reference

12 December 2020

A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat.

1 reference

12 December 2020

Genic microsatellite markers in plants: features and applications

1 reference

12 December 2020

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

12 December 2020

Intragenic tandem repeats generate functional variability

1 reference

12 December 2020

Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes

1 reference

12 December 2020

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

1 reference

12 December 2020

Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome.

1 reference

12 December 2020

SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus

1 reference

12 December 2020

The rise, fall and renaissance of microsatellites in eukaryotic genomes

1 reference

12 December 2020

Improved gapped alignment in BLAST.

1 reference

12 December 2020

EST-SSRs as a resource for population genetic analyses.

1 reference

12 December 2020

The diploid genome sequence of an individual human

1 reference

12 December 2020

The genome-wide determinants of human and chimpanzee microsatellite evolution

1 reference

12 December 2020

The transcriptional landscape of the yeast genome defined by RNA sequencing

1 reference

12 December 2020

Stem cell transcriptome profiling via massive-scale mRNA sequencing

1 reference

12 December 2020

SSR Locator: Tool for Simple Sequence Repeat Discovery Integrated with Primer Design and PCR Simulation.

1 reference

12 December 2020

Next-generation DNA sequencing

1 reference

12 December 2020

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

12 December 2020

AmiGO: online access to ontology and annotation data

1 reference

12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

12 December 2020

Short-read sequencing technologies for transcriptional analyses.

1 reference

12 December 2020

Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map.

1 reference

12 December 2020

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

1 reference

12 December 2020

Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.

1 reference

12 December 2020

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

1 reference

12 December 2020

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

1 reference

12 December 2020

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

12 December 2020

Cost-effective, species-specific microsatellite development for the endangered Dwarf Bulrush (Typha minima) using next-generation sequencing technology

1 reference

12 December 2020

RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome

1 reference

12 December 2020

Optimization of de novo transcriptome assembly from next-generation sequencing data

1 reference

12 December 2020

Molecular assessment of genetic diversity in cluster bean (Cyamopsis tetragonoloba) genotypes

1 reference

12 December 2020

De novo assembly and analysis of RNA-seq data.

1 reference

12 December 2020

Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.).

1 reference

12 December 2020

Adaptation genomics: the next generation

1 reference

12 December 2020

A map of human genome variation from population-scale sequencing

1 reference

12 December 2020

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

1 reference

12 December 2020

Applications of next generation sequencing in molecular ecology of non-model organisms

1 reference

12 December 2020

Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.).

1 reference

12 December 2020

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas)

1 reference

12 December 2020

De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

1 reference

12 December 2020

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh].

1 reference

12 December 2020

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

1 reference

12 December 2020

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

12 December 2020

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

1 reference

12 December 2020

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa.

1 reference

12 December 2020

Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.

1 reference

12 December 2020

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

1 reference

12 December 2020

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

1 reference

12 December 2020

Mining and validation of pyrosequenced simple sequence repeats (SSRs) from American cranberry (Vaccinium macrocarpon Ait.).

1 reference

12 December 2020

Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

1 reference

12 December 2020

Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas)

1 reference

12 December 2020

Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map

1 reference

12 December 2020

Repetitive DNA and next-generation sequencing: computational challenges and solutions

1 reference

12 December 2020

Next generation DNA sequencing technology delivers valuable genetic markers for the genomic orphan legume species, Bituminaria bituminosa

1 reference

12 December 2020

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences.

1 reference

12 December 2020

Applications of next-generation sequencing in plant biology

1 reference

12 December 2020

Development of microsatellite primers of the largest seagrass, Enhalus acoroides (Hydrocharitaceae)

1 reference

12 December 2020

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

12 December 2020

Fast gapped-read alignment with Bowtie 2

1 reference

12 December 2020

De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.).

1 reference

12 December 2020

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

1 reference

12 December 2020

lobSTR: A short tandem repeat profiler for personal genomes

1 reference

12 December 2020

De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.).

1 reference

12 December 2020

Primer3--new capabilities and interfaces

1 reference

12 December 2020

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

1 reference

12 December 2020

Accurate human microsatellite genotypes from high-throughput resequencing data using informed error profiles

1 reference

12 December 2020

Development and molecular characterization of 55 novel polymorphic cDNA-SSR markers in faba bean (Vicia faba L.) using 454 pyrosequencing.

1 reference

12 December 2020

Sequencing, de novo assembly, annotation and SSR and SNP detection of sabaigrass (Eulaliopsis binata) transcriptome.

1 reference

12 December 2020

Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

1 reference

12 December 2020

Development of an expressed gene catalogue and molecular markers from the de novo assembly of short sequence reads of the lentil (Lens culinaris Medik.) transcriptome.

1 reference

12 December 2020

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

12 December 2020

GMATo: A novel tool for the identification and analysis of microsatellites in large genomes

1 reference

12 December 2020

Development of 65 novel polymorphic cDNA-SSR markers in common vetch (Vicia sativa subsp. sativa) using next generation sequencing.

1 reference

12 December 2020

Development of microsatellite markers by transcriptome sequencing in two species of Amorphophallus (Araceae).

1 reference

12 December 2020

De novo assembly of the peanut (Arachis hypogaea L.) seed transcriptome revealed candidate unigenes for oil accumulation pathways

1 reference

12 December 2020

Microsatellite marker discovery using single molecule real-time circular consensus sequencing on the Pacific Biosciences RS.

1 reference

12 December 2020

Floral transcriptome sequencing for SSR marker development and linkage map construction in the tea plant (Camellia sinensis)

1 reference

12 December 2020

Inferring short tandem repeat variation from paired-end short reads

1 reference

12 December 2020

Genetic diversity and domestication origin of tea plant Camellia taliensis (Theaceae) as revealed by microsatellite markers

1 reference

12 December 2020

Transferability of Newly Developed Pear SSR Markers to Other Rosaceae Species.

1 reference

12 December 2020

Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir

1 reference

12 December 2020

Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map.

1 reference

12 December 2020

Development and characterization of simple sequence repeat (SSR) markers based on RNA-sequencing of Medicago sativa and in silico mapping onto the M. truncatula genome

1 reference

12 December 2020

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

1 reference

12 December 2020

Effect of acute gamma irradiation on Curcuma alismatifolia varieties and detection of DNA polymorphism through SSR marker

1 reference

12 December 2020

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

1 reference

12 December 2020

Characterization of the floral transcriptome of Moso bamboo (Phyllostachys edulis) at different flowering developmental stages by transcriptome sequencing and RNA-seq analysis

1 reference

12 December 2020

Next generation sequencing technologies for next generation plant breeding

1 reference

12 December 2020

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

1 reference

12 December 2020

De novo assembly of the common bean transcriptome using short reads for the discovery of drought-responsive genes

1 reference

12 December 2020

RNA-seq analysis of Quercus pubescens Leaves: de novo transcriptome assembly, annotation and functional markers development

1 reference

12 December 2020

Genomic sequencing and microsatellite marker development for Boswellia papyrifera, an economically important but threatened tree native to dry tropical forests.

1 reference

12 December 2020

RNA-Seq analysis and transcriptome assembly for blackberry (Rubus sp. Var. Lochness) fruit

1 reference

12 December 2020

De novo transcriptome assembly of pummelo and molecular marker development

1 reference

12 December 2020

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

1 reference

12 December 2020

Development and Validation of EST-SSR Markers from the Transcriptome of Adzuki Bean (Vigna angularis).

1 reference

12 December 2020

Development of Genomic Microsatellite Markers in Carthamus tinctorius L. (Safflower) Using Next Generation Sequencing and Assessment of Their Cross-Species Transferability and Utility for Diversity Analysis

1 reference

12 December 2020

Comprehensive analyses of genomes, transcriptomes and metabolites of neem tree

1 reference

12 December 2020

Development and characterization of genic-SSR markers from different Asia lotus (Nelumbo nucifera) types by RNA-seq

1 reference

12 December 2020

PSR: polymorphic SSR retrieval

1 reference

12 December 2020

Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis).

1 reference

12 December 2020

RNA-Seq SSRs of Moth Orchid and Screening for Molecular Markers across Genus Phalaenopsis (Orchidaceae).

1 reference

12 December 2020

Development and cross-species transferability of EST-SSR markers in Siberian wildrye (Elymus sibiricus L.) using Illumina sequencing

1 reference

12 December 2020

Transcriptome Sequencing and Development of Genic SSR Markers of an Endangered Chinese Endemic Genus Dipteronia Oliver (Aceraceae).

1 reference

12 December 2020

De novo Transcriptome Analysis and Molecular Marker Development of Two Hemarthria Species

1 reference

12 December 2020

Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae).

1 reference

12 December 2020

Microsatellite markers: what they mean and why they are so useful.

1 reference

12 December 2020

Transcriptome sequencing and simple sequence repeat marker development for three Macaronesian endemic plant species

1 reference

12 December 2020

Transcriptome analysis of colored calla lily (Zantedeschia rehmannii Engl.) by Illumina sequencing: de novo assembly, annotation and EST-SSR marker development

1 reference

12 December 2020

A deep sequencing analysis of transcriptomes and the development of EST-SSR markers in mungbean (Vigna radiata).

1 reference

12 December 2020

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia

1 reference

12 December 2020

GMATA: An Integrated Software Package for Genome-Scale SSR Mining, Marker Development and Viewing

1 reference

12 December 2020

High Throughput Sequencing: An Overview of Sequencing Chemistry

1 reference

12 December 2020

De novo transcriptome assembly, development of EST-SSR markers and population genetic analyses for the desert biomass willow, Salix psammophila

1 reference

12 December 2020

DNA sequencing technologies: 2006-2016.

1 reference

12 December 2020

RNA-Seq of Guar (Cyamopsis tetragonoloba, L. Taub.) Leaves: De novo Transcriptome Assembly, Functional Annotation and Development of Genomic Resources

1 reference

12 December 2020

De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae).

1 reference

12 December 2020

De novo and reference transcriptome assembly of transcripts expressed during flowering provide insight into seed setting in tetraploid red clover

1 reference

12 December 2020

De novo sequencing and comparative analysis of leaf transcriptomes of diverse condensed tannin-containing lines of underutilized Psophocarpus tetragonolobus (L.) DC.

1 reference

12 December 2020

MISA-web: a web server for microsatellite prediction.

1 reference

12 December 2020

Characterization of the transcriptome and EST-SSR development in Boea clarkeana, a desiccation-tolerant plant endemic to China

1 reference

12 December 2020

STRScan: targeted profiling of short tandem repeats in whole-genome sequencing data

1 reference

12 December 2020

Wgssat: A High-Throughput Computational Pipeline for Mining and Annotation of SSR Markers from Whole Genomes

1 reference

12 December 2020

Glycoprotein composition along the pistil of Malus x domestica and the modulation of pollen tube growth

1 reference

12 April 2024

https://opencitations.net/index/api/v1/citations/10.1186/1471-2229-14-1

Identifiers

DOI

10.3390/MOLECULES23020399

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29438290%20AND%20SRC:MED&resulttype=core&format=json

16 March 2020

PubMed publication ID

29438290

1 reference