(Q50919522)

25 March 2018

title

Under-folded proteins: Conformational ensembles and their roles in protein folding, function, and pathogenesis. (English)

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25 March 2018

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1

Vladimir N Uversky

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25 March 2018

1 November 2013

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25 March 2018

published in

Biopolymers

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25 March 2018

volume

99

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25 March 2018

issue

11

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25 March 2018

page(s)

870-887

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25 March 2018

Principles that govern the folding of protein chains

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The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain

21 January 2018

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Einfluss der Configuration auf die Wirkung der Enzyme

21 January 2018

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21 January 2018

The Protein Data Bank

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Protein misfolding, evolution and disease

21 January 2018

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The structural basis of protein folding and its links with human disease

21 January 2018

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Intrinsic disorder and protein function

21 January 2018

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Identification and functions of usefully disordered proteins

21 January 2018

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Flexible nets. The roles of intrinsic disorder in protein interaction networks.

21 January 2018

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Intrinsically disordered protein

21 January 2018

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Coupling of folding and binding for unstructured proteins

21 January 2018

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Intrinsically unstructured proteins and their functions

21 January 2018

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Intrinsically unstructured proteins

21 January 2018

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Unstructural biology coming of age.

21 January 2018

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Fuzzy complexes: polymorphism and structural disorder in protein-protein interactions

21 January 2018

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Natively unfolded proteins: a point where biology waits for physics

21 January 2018

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What does it mean to be natively unfolded?

21 January 2018

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Protein folding revisited. A polypeptide chain at the folding ? misfolding ? nonfolding cross-roads: which way to go?

21 January 2018

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Intrinsically disordered proteins from A to Z.

21 January 2018

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Multitude of binding modes attainable by intrinsically disordered proteins: a portrait gallery of disorder-based complexes

21 January 2018

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Intrinsic disorder-based protein interactions and their modulators

21 January 2018

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Understanding protein non-folding.

21 January 2018

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Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

21 January 2018

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Linking folding and binding

21 January 2018

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The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation.

21 January 2018

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Expanding the proteome: disordered and alternatively folded proteins

21 January 2018

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Review: mechanisms of disaggregation and refolding of stable protein aggregates by molecular chaperones

21 January 2018

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

21 January 2018

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From Levinthal to pathways to funnels

21 January 2018

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Protein Folding: A Perspective from Theory and Experiment.

21 January 2018

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The fundamentals of protein folding: bringing together theory and experiment

21 January 2018

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Understanding protein folding via free-energy surfaces from theory and experiment

21 January 2018

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Protein folding and unfolding at atomic resolution

21 January 2018

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‘Molten‐globule state’: a compact form of globular proteins with mobile side‐chains

21 January 2018

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Protein folding: progress made and promises ahead

21 January 2018

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The Yin and Yang of protein folding

21 January 2018

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Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

21 January 2018

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Evidence for identity between the equilibrium unfolding intermediate and a transient folding intermediate: a comparative study of the folding reactions of alpha-lactalbumin and lysozyme

21 January 2018

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An early immunoreactive folding intermediate of the tryptophan synthease beta 2 subunit is a 'molten globule'.

21 January 2018

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Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

21 January 2018

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Structure and stability of a second molten globule intermediate in the apomyoglobin folding pathway

21 January 2018

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Structures of folding intermediates

21 January 2018

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Compact intermediate states in protein folding.

21 January 2018

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Discrete intermediates versus molten globule models for protein folding: characterization of partially folded intermediates of apomyoglobin

21 January 2018

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Anion-induced folding of Staphylococcal nuclease: characterization of multiple equilibrium partially folded intermediates.

21 January 2018

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"Partly folded" state, a new equilibrium state of protein molecules: four-state guanidinium chloride-induced unfolding of beta-lactamase at low temperature.

21 January 2018

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Biophysical constraints for protein structure prediction.

21 January 2018

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Denatured collapsed states in protein folding: example of apomyoglobin.

21 January 2018

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Polymeric aspects of protein folding: a brief overview

21 January 2018

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Protein structure and neutral theory of evolution

21 January 2018

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Theory for protein mutability and biogenesis

21 January 2018

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THE EFFECT OF DENATURATION ON THE VISCOSITY OF PROTEIN SYSTEMS

21 January 2018

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On the Structure of Native, Denatured, and Coagulated Proteins

21 January 2018

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21 January 2018

2 references

21 January 2018

12 December 2020

Random-coil behavior and the dimensions of chemically unfolded proteins

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Dimensions of protein random coils

21 January 2018

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Reassessing random-coil statistics in unfolded proteins

21 January 2018

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Compact denatured state of a staphylococcal nuclease mutant by guanidinium as determined by resonance energy transfer

21 January 2018

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Structure and dynamics of a denatured 131-residue fragment of staphylococcal nuclease: a heteronuclear NMR study

21 January 2018

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A dynamic bundle of four adjacent hydrophobic segments in the denatured state of staphylococcal nuclease

21 January 2018

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Persistence of native-like topology in a denatured protein in 8 M urea

21 January 2018

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Urea-induced unfolding of the alpha subunit of tryptophan synthase: one-dimensional proton NMR evidence for residual structure near histidine-92 at high denaturant concentration.

21 January 2018

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Mutagenic and thermodynamic analyses of residual structure in the alpha subunit of tryptophan synthase.

21 January 2018

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Complete 15N and 1H NMR assignments for the amino-terminal domain of the phage 434 repressor in the urea-unfolded form

21 January 2018

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1H, 15N and 13C NMR assignments of the 434 repressor fragments 1-63 and 44-63 unfolded in 7 M urea.

21 January 2018

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Investigating the refolding pathway of human acidic fibroblast growth factor (hFGF-1) from the residual structure(s) obtained by denatured-state hydrogen/deuterium exchange

21 January 2018

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Structural characterization of folded and unfolded states of an SH3 domain in equilibrium in aqueous buffer.

21 January 2018

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NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions

21 January 2018

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A comparison of the pH, urea, and temperature-denatured states of barnase by heteronuclear NMR: implications for the initiation of protein folding

21 January 2018

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WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state

21 January 2018

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Protein folding from a highly disordered denatured state: the folding pathway of chymotrypsin inhibitor 2 at atomic resolution

21 January 2018

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Mapping the folding intermediate of human carbonic anhydrase II. Probing substructure by chemical reactivity and spin and fluorescence labeling of engineered cysteine residues

21 January 2018

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Is the unfolded state the Rosetta Stone of the protein folding problem?

21 January 2018

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Molecular hinges in protein folding: the urea-denatured state of apomyoglobin

21 January 2018

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Long-range interactions within a nonnative protein

21 January 2018

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Modulating native-like residual structure in the fully denatured state of photoactive yellow protein affects its refolding

21 January 2018

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The N-terminal domain of the enzyme I is a monomeric well-folded protein with a low conformational stability and residual structure in the unfolded state.

21 January 2018

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Characterization of the unfolded state of bovine alpha-lactalbumin and comparison with unfolded states of homologous proteins

21 January 2018

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Direct demonstration of structural similarity between native and denatured eglin C.

21 January 2018

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A residual structure in unfolded intestinal fatty acid binding protein consists of amino acids that are neighbors in the native state

21 January 2018

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Urea-dependent unfolding of HIV-1 protease studied by circular dichroism and small-angle X-ray scattering

21 January 2018

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A pre-existing hydrophobic collapse in the unfolded state of an ultrafast folding protein

21 January 2018

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Assessing native and non-native conformational states of a protein by methylene carbene labeling: the case of Bacillus licheniformis beta-lactamase

21 January 2018

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Extreme temperature tolerance of a hyperthermophilic protein coupled to residual structure in the unfolded state

21 January 2018

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Identification of residual structure in the unfolded state of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues

21 January 2018

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Ensemble calculations of unstructured proteins constrained by RDC and PRE data: a case study of urea-denatured ubiquitin

21 January 2018

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Denatured states of proteins

21 January 2018

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Structural analysis of non-native states of proteins by NMR methods

21 January 2018

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Are denatured proteins ever random coils?

21 January 2018

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Origins of protein denatured state compactness and hydrophobic clustering in aqueous urea: inferences from nonpolar potentials of mean force

21 January 2018

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The concept of a random coil. Residual structure in peptides and denatured proteins

21 January 2018

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Conformation of Polypeptides and Proteins

21 January 2018

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The expanded denatured state: an ensemble of conformations trapped in a locally encoded topological space

21 January 2018

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Three-state denaturation of DnaK induced by guanidine hydrochloride. Evidence for an expandable intermediate

21 January 2018

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Partially folded conformations in the folding pathway of bovine carbonic anhydrase II: a fluorescence spectroscopic analysis

21 January 2018

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Unraveling multistate unfolding of rabbit muscle creatine kinase

21 January 2018

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Cofactor Binding Modulates the Conformational Stabilities and Unfolding Patterns of NAD+-dependent DNA Ligases from Escherichia coli and Thermus scotoductus

21 January 2018

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Structural and functional adaptations to extreme temperatures in psychrophilic, mesophilic, and thermophilic DNA ligases

21 January 2018

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Evidence of an associative intermediate on the myoglobin refolding pathway

21 January 2018

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Molten globule of cytochrome c studied by small angle X-ray scattering.

21 January 2018

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Structural characterization of the molten globule of alpha-lactalbumin by solution X-ray scattering

21 January 2018

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High-resolution three-dimensional structure of horse heart cytochrome c

21 January 2018

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Structure and stability of the molten globule state of guinea-pig alpha-lactalbumin: a hydrogen exchange study

21 January 2018

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Structural description of acid-denatured cytochrome c by hydrogen exchange and 2D NMR.

21 January 2018

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The active form of the steroidogenic acute regulatory protein, StAR, appears to be a molten globule

21 January 2018

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NMR spin relaxation methods for characterization of disorder and folding in proteins

21 January 2018

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Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding

21 January 2018

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Study of the "molten globule" intermediate state in protein folding by a hydrophobic fluorescent probe

21 January 2018

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Use of fast protein size-exclusion liquid chromatography to study the unfolding of proteins which denature through the molten globule

21 January 2018

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The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

21 January 2018

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Molten globule intermediates and protein folding

21 January 2018

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The molten globule is a third thermodynamical state of protein molecules.

21 January 2018

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Unusual biophysics of intrinsically disordered proteins

21 January 2018

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Malleability of protein folding pathways: a simple reason for complex behaviour

21 January 2018

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Protein folding: the stepwise assembly of foldon units

21 January 2018

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Protein folding and misfolding: mechanism and principles.

21 January 2018

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Protein folding: independent unrelated pathways or predetermined pathway with optional errors

21 January 2018

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A unified mechanism for protein folding: predetermined pathways with optional errors

21 January 2018

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Sequence complexity of disordered protein

21 January 2018

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Intrinsic disorder and functional proteomics

21 January 2018

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Composition Profiler: a tool for discovery and visualization of amino acid composition differences

21 January 2018

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Coupled folding and binding with alpha-helix-forming molecular recognition elements.

21 January 2018

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Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

21 January 2018

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Intrinsic disorder in cell-signaling and cancer-associated proteins

21 January 2018

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Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

21 January 2018

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Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

21 January 2018

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Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions

21 January 2018

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Toward a quantitative theory of intrinsically disordered proteins and their function

21 January 2018

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The role of disorder in interaction networks: a structural analysis

21 January 2018

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Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners

21 January 2018

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Analysis of molecular recognition features (MoRFs)

21 January 2018

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Characterization of molecular recognition features, MoRFs, and their binding partners

21 January 2018

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Prediction of protein binding regions in disordered proteins

21 January 2018

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ANCHOR: web server for predicting protein binding regions in disordered proteins.

21 January 2018

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The expanding view of protein-protein interactions: complexes involving intrinsically disordered proteins

21 January 2018

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Limitations of induced folding in molecular recognition by intrinsically disordered proteins

21 January 2018

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Tight regulation of unstructured proteins: from transcript synthesis to protein degradation

21 January 2018

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Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

21 January 2018

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Unfoldomics of human diseases: linking protein intrinsic disorder with diseases

21 January 2018

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The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways

21 January 2018

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Biological activity and pathological implications of misfolded proteins.

21 January 2018

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Amyloid fibrillogenesis: themes and variations

21 January 2018

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Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

21 January 2018

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Conformational constraints for amyloid fibrillation: the importance of being unfolded

21 January 2018

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Evolution of amyloid: what normal protein folding may tell us about fibrillogenesis and disease

21 January 2018

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Protein aggregation: folding aggregates, inclusion bodies and amyloid

21 January 2018

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Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease

21 January 2018

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Alternative conformations of amyloidogenic proteins govern their behavior

21 January 2018

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Mechanistic studies of the folding of human lysozyme and the origin of amyloidogenic behavior in its disease-related variants.

21 January 2018

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The most pathogenic transthyretin variant, L55P, forms amyloid fibrils under acidic conditions and protofilaments under physiological conditions

21 January 2018

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Transthyretin amyloidosis: a tale of weak interactions.

21 January 2018

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Conformational intermediate of the amyloidogenic protein beta 2-microglobulin at neutral pH.

21 January 2018

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Reduction of the amyloidogenicity of a protein by specific binding of ligands to the native conformation

21 January 2018

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Inhibiting transthyretin amyloid fibril formation via protein stabilization

21 January 2018

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Effect of environmental factors on the kinetics of insulin fibril formation: elucidation of the molecular mechanism

21 January 2018

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Intrinsic disorder in proteins associated with neurodegenerative diseases

21 January 2018

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Amyloidogenesis of natively unfolded proteins

21 January 2018

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Trimethylamine-N-oxide-induced folding of alpha-synuclein.

21 January 2018

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Amyloid fibrils from the mammalian protein prothymosin alpha

21 January 2018

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Structural and kinetic features of amyloid beta-protein fibrillogenesis

21 January 2018

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Conformational properties of alpha-synuclein in its free and lipid-associated states

21 January 2018

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A protein-chameleon: conformational plasticity of alpha-synuclein, a disordered protein involved in neurodegenerative disorders

21 January 2018

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Alpha-synuclein: normal function and role in neurodegenerative diseases.

21 January 2018

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Neuropathological spectrum of synucleinopathies

21 January 2018

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Part II: alpha-synuclein and its molecular pathophysiological role in neurodegenerative disease.

21 January 2018

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Neuropathology of synuclein aggregates

21 January 2018

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Clinical overview of the synucleinopathies

21 January 2018

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Alpha-synuclein and the Lewy body disorders

21 January 2018

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Parkinson's disease and other alpha-synucleinopathies

21 January 2018

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Synucleinopathies: clinical and pathological implications

21 January 2018

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Filamentous nerve cell inclusions in neurodegenerative diseases: tauopathies and alpha-synucleinopathies

21 January 2018

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Conformational behavior and aggregation of alpha-synuclein in organic solvents: modeling the effects of membranes

21 January 2018

1 reference

Metal-triggered structural transformations, aggregation, and fibrillation of human alpha-synuclein. A possible molecular NK between Parkinson's disease and heavy metal exposure

21 January 2018

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Role of protein-water interactions and electrostatics in alpha-synuclein fibril formation.

21 January 2018

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Pesticides directly accelerate the rate of alpha-synuclein fibril formation: a possible factor in Parkinson's disease

21 January 2018

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Synergistic effects of pesticides and metals on the fibrillation of alpha-synuclein: implications for Parkinson's disease

21 January 2018

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The herbicide paraquat causes up-regulation and aggregation of alpha-synuclein in mice: paraquat and alpha-synuclein

21 January 2018

1 reference

Heparin and other glycosaminoglycans stimulate the formation of amyloid fibrils from alpha-synuclein in vitro.

21 January 2018

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Polycation-induced oligomerization and accelerated fibrillation of human alpha-synuclein in vitro

21 January 2018

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Stabilization of partially folded conformation during alpha-synuclein oligomerization in both purified and cytosolic preparations

21 January 2018

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Methionine oxidation inhibits fibrillation of human alpha-synuclein in vitro

21 January 2018

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Mysterious oligomerization of the amyloidogenic proteins

21 January 2018

1 reference

Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.

21 January 2018

1 reference

Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes

21 January 2018

1 reference

Protein disorder in the human diseasome: unfoldomics of human genetic diseases

21 January 2018

1 reference

The human disease network

21 January 2018

1 reference

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

21 January 2018

1 reference

Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain.

21 January 2018

1 reference

Dynamic equilibrium engagement of a polyvalent ligand with a single-site receptor

21 January 2018

1 reference

Potential conformational heterogeneity of p53 bound to S100B(ββ).

21 January 2018

1 reference

Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX).

21 January 2018

1 reference

The Chemistry of Protein Denaturation

21 January 2018

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NMR determination of residual structure in a urea-denatured protein, the 434-repressor

21 January 2018

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Influence of local and residual structures on the scaling behavior and dimensions of unfolded proteins

21 January 2018

1 reference

Unfolded, yes, but random? Never!

21 January 2018

1 reference

Domain stability in immunoglobulin light chain deposition disorders.

21 January 2018

1 reference

12 December 2020

A noncovalent peptide complex as a model for an early folding intermediate of cytochrome c

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12 December 2020

Detection of local structures in reduced unfolded bovine pancreatic trypsin inhibitor

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12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. II. Distance restraints from paramagnetic relaxation and calculation of an ensemble of structures

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12 December 2020

Abundance of intrinsic disorder in protein associated with cardiovascular disease

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12 December 2020

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life

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12 December 2020

Further evidence on the equilibrium "pre-molten globule state": four-state guanidinium chloride-induced unfolding of carbonic anhydrase B at low temperature

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12 December 2020

Protein folding and its links with human disease

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12 December 2020

Structural characterization of a partly folded apomyoglobin intermediate

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12 December 2020

Kinetic and equilibrium folding intermediates

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12 December 2020

Parkinsonism plus syndrome--a review

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12 December 2020

Compact intermediates states in protein folding

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12 December 2020

The denatured state (the other half of the folding equation) and its role in protein stability.

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12 December 2020

Protein dynamics and conformational disorder in molecular recognition

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12 December 2020

Sequential unfolding of adenylate kinase during denaturation by guanidine hydrochloride

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12 December 2020

Intrinsic protein disorder and protein-protein interactions

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12 December 2020

Do protein molecules have a native-like topology in the pre-molten globule state?

1 reference

12 December 2020

The alpha-synucleinopathies: Parkinson's disease, dementia with Lewy bodies, and multiple system atrophy.

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12 December 2020

Structural studies of tau protein and Alzheimer paired helical filaments show no evidence for beta-structure

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12 December 2020

'All-or-none' mechanism of the molten globule unfolding

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12 December 2020

Conformational transitions of islet amyloid polypeptide (IAPP) in amyloid formation in vitro

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12 December 2020

All-or-none solvent-induced transitions between native, molten globule and unfolded states in globular proteins

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12 December 2020

Alpha-Lactalbumin: compact state with fluctuating tertiary structure?

1 reference

12 December 2020

1 reference

12 December 2020

The equilibrium folding pathway of staphylococcal nuclease: identification of the most stable chain-chain interactions by NMR and CD spectroscopy

1 reference

12 December 2020

Characterization of folding intermediates of human carbonic anhydrase II: probing substructure by chemical labeling of SH groups introduced by site-directed mutagenesis

1 reference

12 December 2020

Nonlocal interactions stabilize compact folding intermediates in reduced unfolded bovine pancreatic trypsin inhibitor

1 reference

12 December 2020

Protein globularization during folding. A study by synchrotron small-angle X-ray scattering

1 reference

12 December 2020

Protein disorder and the evolution of molecular recognition: theory, predictions and observations

1 reference

12 December 2020

On the nature of the structural change of the colicin E1 channel peptide necessary for its translocation-competent state

1 reference

12 December 2020

FAP mutations destabilize transthyretin facilitating conformational changes required for amyloid formation

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12 December 2020

Following protein folding in real time using NMR spectroscopy

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12 December 2020

Residual helical and turn structure in the denatured state of staphylococcal nuclease: analysis of peptide fragments

1 reference

12 December 2020

Molten globule and protein folding

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12 December 2020

Use of fluorescence decay times of 8-ANS-protein complexes to study the conformational transitions in proteins which unfold through the molten globule state

1 reference

12 December 2020

Biochemistry. Controlled chaos

1 reference

12 December 2020

Pyrene excimer fluorescence of yeast alcohol dehydrogenase: a sensitive probe to investigate ligand binding and unfolding pathway of the enzyme

1 reference

12 December 2020

Characterization of a partly folded protein by NMR methods: studies on the molten globule state of guinea pig alpha-lactalbumin

1 reference

12 December 2020

Intrinsic protein disorder in complete genomes

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12 December 2020

Why are "natively unfolded" proteins unstructured under physiologic conditions?

1 reference

12 December 2020

Characterization of long-range structure in the denatured state of staphylococcal nuclease. I. Paramagnetic relaxation enhancement by nitroxide spin labels

1 reference

12 December 2020

Stages in the mechanism of self-organization of protein molecules

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12 December 2020

Predicting Disordered Regions from Amino Acid Sequence: Common Themes Despite Differing Structural Characterization

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12 December 2020

Circular dichroism of denatured barstar suggests residual structure,

1 reference

12 December 2020

Evidence for a molten globule state as a general intermediate in protein folding

1 reference

12 December 2020

[Staged equilibrium of carbonic anhydrase unfolding in strong denaturants]

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12 December 2020

Thousands of proteins likely to have long disordered regions.

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12 December 2020

Parkinson's disease and related alpha-synucleinopathies are brain amyloidoses

1 reference

12 December 2020

Identifiers

DOI

10.1002/BIP.22298

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25 March 2018

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1 reference

25 March 2018