(Q52018270)

19 April 2018

reason for preferred rank

title

A novel shape complementarity scoring function for protein‐protein docking (English)

1 reference

24 December 2023

A novel shape complementarity scoring function for protein-protein docking (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12696051

24 December 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12696051

24 December 2023

1 reference

24 December 2023

1 reference

24 December 2023

author name string

Rong Chen

1

1 reference

19 April 2018

Zhiping Weng

2

1 reference

19 April 2018

language of work or name

English

0 references

publication date

1 May 2003

1 reference

19 April 2018

15 May 2003

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12696051

full work available at URL

24 December 2023

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1002%2Fprot.10334

1 reference

https://onlinelibrary.wiley.com/doi/pdf/10.1002/prot.10334

24 December 2023

1 reference

24 December 2023

1 reference

19 April 2018

volume

51

1 reference

19 April 2018

issue

3

1 reference

19 April 2018

page(s)

397-408

1 reference

19 April 2018

Structural genomics: beyond the human genome project

cites work

1

1 reference

24 December 2023

The Protein Data Bank

2

1 reference

A protein linkage map of Escherichia coli bacteriophage T7.

24 December 2023

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A genomic approach of the hepatitis C virus generates a protein interaction map.

24 December 2023

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1 reference

The protein-protein interaction map of Helicobacter pylori

24 December 2023

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Protein interaction mapping in C. elegans using proteins involved in vulval development

24 December 2023

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Yeast two-hybrid systems and protein interaction mapping projects for yeast and worm

24 December 2023

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Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

24 December 2023

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Genome-wide analysis of vaccinia virus protein-protein interactions

24 December 2023

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

24 December 2023

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Proteomics to study genes and genomes

24 December 2023

11

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Protein therapeutics: promises and challenges for the 21st century

24 December 2023

12

1 reference

Protein-protein recognition

24 December 2023

14

1 reference

Predicting the structure of protein complexes: a step in the right direction

24 December 2023

15

1 reference

Predictive docking of protein-protein and protein-DNA complexes.

24 December 2023

16

1 reference

Prediction of protein-protein interactions by docking methods.

24 December 2023

18

1 reference

Principles of docking: An overview of search algorithms and a guide to scoring functions

24 December 2023

19

1 reference

"Soft docking": matching of molecular surface cubes

24 December 2023

20

1 reference

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

24 December 2023

21

1 reference

A systematic study of low-resolution recognition in protein--protein complexes

24 December 2023

23

1 reference

Modelling protein docking using shape complementarity, electrostatics and biochemical information

24 December 2023

24

1 reference

Rapid refinement of protein interfaces incorporating solvation: application to the docking problem

24 December 2023

25

1 reference

Protein docking using continuum electrostatics and geometric fit

24 December 2023

26

1 reference

Examination of shape complementarity in docking ofUnbound proteins

24 December 2023

29

1 reference

Protein docking using a genetic algorithm.

24 December 2023

32

1 reference

Docking unbound proteins using shape complementarity, desolvation, and electrostatics.

24 December 2023

33

1 reference

Soft protein-protein docking in internal coordinates

24 December 2023

34

1 reference

An analysis of conformational changes on protein-protein association: implications for predictive docking.

24 December 2023

35

1 reference

Analytical molecular surface calculation

24 December 2023

36

1 reference

Solvent-accessible surfaces of proteins and nucleic acids

24 December 2023

37

1 reference

Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking

24 December 2023

38

1 reference

A geometry-based suite of molecular docking processes

24 December 2023

39

1 reference

Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.

24 December 2023

40

1 reference

A geometric approach to macromolecule-ligand interactions

24 December 2023

41

1 reference

Protein docking and complementarity

24 December 2023

42

1 reference

Protein-protein docking with multiple residue conformations and residue substitutions

24 December 2023

43

1 reference

The interpretation of protein structures: Estimation of static accessibility

24 December 2023

47

1 reference

Molecular docking programs successfully predict the binding of a beta-lactamase inhibitory protein to TEM-1 beta-lactamase

24 December 2023

48

1 reference

Comparison of methods for searching protein sequence databases.

24 December 2023

49

1 reference

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

24 December 2023

50

1 reference

Knowledge-based potentials for proteins

24 December 2023

51

1 reference

Structure-derived potentials and protein simulations

24 December 2023

52

1 reference

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

24 December 2023

53

1 reference

Empirical potentials and functions for protein folding and binding.

24 December 2023

54

1 reference

Consistency in structural energetics of protein folding and peptide recognition

24 December 2023

55

1 reference

Computational determination of side chain specificity for pockets in class I MHC molecules

24 December 2023

56

1 reference

Determination of atomic desolvation energies from the structures of crystallized proteins.

24 December 2023

58

1 reference

Solvation energy in protein folding and binding

24 December 2023

59

1 reference

The atomic structure of protein-protein recognition sites

24 December 2023

61

1 reference

Dissecting protein-protein recognition sites

24 December 2023

62

1 reference

24 December 2023

Identifiers

DOI

10.1002/PROT.10334

1 reference

19 April 2018

1 reference

19 April 2018