(Q52721688)

6 May 2018

title

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. (English)

1 reference

6 May 2018

Cancer Genome Atlas Research Network

author

10

object named as

Cancer Genome Atlas Research Network

1 reference

6 May 2018

0 references

11

Anil K Sood

1 reference

6 May 2018

author name string

Hua-Sheng Chiu

1

1 reference

6 May 2018

Sonal Somvanshi

2

1 reference

6 May 2018

Ektaben Patel

3

1 reference

6 May 2018

Ting-Wen Chen

4

1 reference

6 May 2018

Vivek P Singh

5

1 reference

6 May 2018

Barry Zorman

6

1 reference

6 May 2018

Sagar L Patil

7

1 reference

6 May 2018

Yinghong Pan

8

1 reference

6 May 2018

Sujash S Chatterjee

9

1 reference

6 May 2018

Preethi H Gunaratne

12

1 reference

6 May 2018

Pavel Sumazin

13

1 reference

6 May 2018

publication date

1 April 2018

1 reference

6 May 2018

published in

Cell Reports

1 reference

6 May 2018

volume

23

1 reference

6 May 2018

page(s)

297-312.e12

1 reference

6 May 2018

issue

1

1 reference

6 May 2018

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5906131/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation

22 May 2018

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DNA-binding specificities of human transcription factors

22 May 2018

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22 May 2018

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22 May 2018

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

22 May 2018

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22 May 2018

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22 May 2018

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Functional analysis of transcription factor binding sites in human promoters

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

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22 May 2018

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22 May 2018

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LincRNA-p21 suppresses target mRNA translation

22 May 2018

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22 May 2018

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22 May 2018

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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

22 May 2018

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The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

22 May 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

22 May 2018

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

22 May 2018

1 reference

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A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

22 May 2018

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Limited availability of ZBP1 restricts axonal mRNA localization and nerve regeneration capacity.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

22 May 2018

1 reference

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Regularization Paths for Generalized Linear Models via Coordinate Descent

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

A systems biology approach to transcription factor binding site prediction

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

The landscape of somatic copy-number alteration across human cancers

22 May 2018

1 reference

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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

22 May 2018

1 reference

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Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

The Sequence Alignment/Map format and SAMtools

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

miRecords: an integrated resource for microRNA-target interactions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Positional distribution of human transcription factor binding sites

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

uShuffle: a useful tool for shuffling biological sequences while preserving the k-let counts

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Genomic profiling of 766 cancer-related genes in archived esophageal normal and carcinoma tissues

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Tissue-specific regulatory elements in mammalian promoters

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

SwissRegulon: a database of genome-wide annotations of regulatory sites

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

CancerGenes: a gene selection resource for cancer genome projects

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

DNA motifs in human and mouse proximal promoters predict tissue-specific expression

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Mining ChIP-chip data for transcription factor and cofactor binding sites

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Genome-wide prediction and analysis of function-specific transcription factor binding sites.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

A census of human cancer genes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

MAPK signal pathways in the regulation of cell proliferation in mammalian cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Downregulated long noncoding RNA MEG3 is associated with poor prognosis and promotes cell proliferation in gastric cancer.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

13 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5906131

Guilt-by-association goes global

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29617668

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELREP.2018.03.064

1 reference

6 May 2018

PMCID

5906131

1 reference

6 May 2018

PubMed ID

29617668

1 reference

6 May 2018