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Practical considerations for plant phylogenomics.
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Europe PubMed Central
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
title
Practical considerations for plant phylogenomics
(English)
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Europe PubMed Central
PMCID
5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
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phylogenomics
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Matthew G. Johnson
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2
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Europe PubMed Central
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
Michael R. McKain
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1
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Europe PubMed Central
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
Simon Uribe-Convers
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
Deren Eaton
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4
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5895195
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25 March 2020
Ya Yang
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5
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Europe PubMed Central
PMCID
5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
author name string
Michael R McKain
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1
1 reference
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Europe PubMed Central
PMCID
5895195
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14 June 2018
reference URL
http://europepmc.org/abstract/PMC/5895195
Deren Eaton
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4
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PMCID
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14 June 2018
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http://europepmc.org/abstract/PMC/5895195
publication date
1 March 2018
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25 March 2020
published in
Applications in Plant Sciences
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
volume
6
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
issue
3
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5895195
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
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25 March 2020
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25 March 2020
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14 June 2018
Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium).
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14 June 2018
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14 June 2018
Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis.
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14 June 2018
Multiple measures could alleviate long-branch attraction in phylogenomic reconstruction of Cupressoideae (Cupressaceae).
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14 June 2018
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14 June 2018
Targeted capture and sequencing of gene-sized DNA molecules
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14 June 2018
Timing of rapid diversification and convergent origins of active pollination within Agavoideae (Asparagaceae).
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14 June 2018
Strategies for complete plastid genome sequencing.
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14 June 2018
Importance of incomplete lineage sorting and introgression in the origin of shared genetic variation between two closely related pines with overlapping distributions
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae).
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14 June 2018
Next-generation polyploid phylogenetics: rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
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14 June 2018
RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data
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14 June 2018
The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity
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14 June 2018
Strongly asymmetric hybridization barriers shape the origin of a new polyploid species and its hybrid ancestor
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14 June 2018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
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14 June 2018
A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales
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14 June 2018
The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae).
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14 June 2018
Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
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14 June 2018
Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
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14 June 2018
A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae)
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14 June 2018
Computational Performance and Statistical Accuracy of *BEAST and Comparisons with Other Methods
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14 June 2018
Harnessing the power of RADseq for ecological and evolutionary genomics
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14 June 2018
Early genome duplications in conifers and other seed plants
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14 June 2018
Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming
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14 June 2018
Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae).
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14 June 2018
PHYLUCE is a software package for the analysis of conserved genomic loci
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14 June 2018
Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
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14 June 2018
ASTRID: Accurate Species TRees from Internode Distances
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Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences
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14 June 2018
A protocol for targeted enrichment of intron-containing sequence markers for recent radiations: A phylogenomic example from Heuchera (Saxifragaceae)
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14 June 2018
Historical introgression among the American live oaks and the comparative nature of tests for introgression
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14 June 2018
ddRAD-seq phylogenetics based on nucleotide, indel, and presence-absence polymorphisms: Analyses of two avian genera with contrasting histories
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14 June 2018
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
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14 June 2018
Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.
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14 June 2018
Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta
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14 June 2018
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
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14 June 2018
A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus
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14 June 2018
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing
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14 June 2018
Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq).
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14 June 2018
Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing
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14 June 2018
Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.
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14 June 2018
Data access for the 1,000 Plants (1KP) project
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14 June 2018
Evolutionary and biogeographical patterns of barnacles from deep-sea hydrothermal vents
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14 June 2018
Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrus species: analysis of chromosome 2
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14 June 2018
Phylogeny of zebrafish, a "model species," within Danio, a "model genus"
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14 June 2018
Fast and sensitive protein alignment using DIAMOND
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14 June 2018
Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV.
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14 June 2018
Phylotranscriptomic analysis of the origin and early diversification of land plants
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
Hyb-Seq: Combining target enrichment and genome skimming for plant phylogenomics
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae
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14 June 2018
A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
A method for extracting high-quality RNA from diverse plants for next-generation sequencing and gene expression analyses
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
ASTRAL: genome-scale coalescent-based species tree estimation
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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14 June 2018
Quartet inference from SNP data under the coalescent model
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: a case study in Carex (Cyperaceae).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
A framework phylogeny of the American oak clade based on sequenced RAD data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Species delimitation using genome-wide SNP data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
ezRAD: a simplified method for genomic genotyping in non-model organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genomic treasure troves: complete genome sequencing of herbarium and insect museum specimens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Stacks: an analysis tool set for population genomics
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis)
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Highly multiplexed quantitation of gene expression on single cells
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
High throughput HLA genotyping using 454 sequencing and the Fluidigm Access Array™ System for simplified amplicon library preparation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
How to open the treasure chest? Optimising DNA extraction from herbarium specimens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome-wide patterns of divergence and gene flow across a butterfly radiation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome-wide association study in Han Chinese identifies four new susceptibility loci for coronary artery disease
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The effect of input DNA copy number on genotype call and characterising SNP markers in the humpback whale genome using a nanofluidic array
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Anchored hybrid enrichment for massively high-throughput phylogenomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Inferring phylogenies from RAD sequence data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Discovery and prioritization of somatic mutations in diffuse large B-cell lymphoma (DLBCL) by whole-exome sequencing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Summarizing and correcting the GC content bias in high-throughput sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
DNA methylation profiling defines clinically relevant biological subsets of non-small cell lung cancer
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Development and mapping of SNP assays in allotetraploid cotton
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
DNA damage in plant herbarium tissue
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Testing for ancient admixture between closely related populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Target-enrichment strategies for next-generation sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
HaMStR: profile hidden markov model based search for orthologs in ESTs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Rapid SNP discovery and genetic mapping using sequenced RAD markers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Phylogenetic utility of the external transcribed spacer (ETS) of 18S-26S rDNA: congruence of ETS and ITS trees of Calycadenia (Compositae).
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
14 June 2018
Guidelines for collecting vouchers and tissues intended for genomic work (Smithsonian Institution): Botany Best Practices
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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16 June 2018
Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula (Campanulaceae) clade.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
Misconceptions on Missing Data in RAD-seq Phylogenetics with a Deep-scale Example from Flowering Plants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
Evolutionary transitions in the Asteraceae coincide with marked shifts in transposable element abundance.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
16 June 2018
Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
A software tool 'CroCo' detects pervasive cross-species contamination in next generation sequencing data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Ten simple rules for biologists learning to program
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
The unexpected depths of genome-skimming data: A case study examining Goodeniaceae floral symmetry genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Primers for Castilleja and their utility across Orobanchaceae: I. Chloroplast primers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Improved transcriptome sampling pinpoints 26 ancient and more recent polyploidy events in Caryophyllales, including two allopolyploidy events
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
A genetic legacy of introgression confounds phylogeny and biogeography in oaks.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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13 August 2018
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
The rectal cancer microRNAome--microRNA expression in rectal cancer and matched normal mucosa.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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13 August 2018
Targeted enrichment strategies for next-generation plant biology.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
retrieved
13 August 2018
Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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13 August 2018
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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13 August 2018
Plastid phylogenomic analysis of green plants: A billion years of evolutionary history
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5895195
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13 August 2018
Identifiers
DOI
10.1002/APS3.1038
1 reference
stated in
Europe PubMed Central
PMCID
5895195
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
Fatcat ID
release_w52qnxocfjfolcrhspwj7cxqmy
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/w52qnxocfjfolcrhspwj7cxqmy
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMCID
5895195
1 reference
stated in
Europe PubMed Central
PMCID
5895195
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
PubMed ID
29732268
1 reference
stated in
Europe PubMed Central
PMCID
5895195
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29732268%20AND%20SRC:MED&resulttype=core&format=json
retrieved
25 March 2020
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