(Q57840256)

English

Structural, thermodynamical, and dynamical properties of oligomers formed by the amyloid NNQQ peptide: Insights from coarse-grained simulations

No description defined

In more languages

Statements

scholarly article

0 references

Structural, thermodynamical, and dynamical properties of oligomers formed by the amyloid NNQQ peptide: Insights from coarse-grained simulations (English)

0 references

object named as

Yan Lu

1

0 references

object named as

Guanghong Wei

2

0 references

author name string

Philippe Derreumaux

3

0 references

language of work or name

0 references

publication date

14 July 2012

0 references

Journal of Chemical Physics

0 references

137

0 references

2

0 references

025101

0 references

Protein misfolding, functional amyloid, and human disease

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Principles governing oligomer formation in amyloidogenic peptides

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

What drives amyloid molecules to assemble into oligomers and fibrils?

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A beta oligomers - a decade of discovery

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structural basis for inhibiting β-amyloid oligomerization by a non-coded β-breaker-substituted endomorphin analogue.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Small molecule inhibitors of aggregation indicate that amyloid beta oligomerization and fibrillization pathways are independent and distinct

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Small-molecule conversion of toxic oligomers to nontoxic β-sheet-rich amyloid fibrils

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Characteristics of Amyloid-Related Oligomers Revealed by Crystal Structures of Macrocyclic β-Sheet Mimics

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Putative aggregation initiation sites in prion protein.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Stabilities and conformations of Alzheimer's beta -amyloid peptide oligomers (Abeta 16-22, Abeta 16-35, and Abeta 10-35): Sequence effects

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Stability and structure of oligomers of the Alzheimer peptide Abeta16-22: from the dimer to the 32-mer

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

How fast-folding proteins fold

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Formation and growth of oligomers: a Monte Carlo study of an amyloid tau fragment

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

The Alzheimer beta-amyloid (Abeta(1-39)) dimer in an implicit solvent

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Coarse-grained models for protein aggregation.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

In silico study of amyloid beta-protein folding and oligomerization

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Effect of beta-sheet propensity on peptide aggregation

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Spontaneous formation of twisted Aβ(16-22) fibrils in large-scale molecular-dynamics simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Phase diagram of alpha-helical and beta-sheet forming peptides.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Atomic structures of amyloid cross-beta spines reveal varied steric zippers

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide GNNQQNY from the yeast prion sup-35

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Transformation of amyloid β(1-40) oligomers into fibrils is characterized by a major change in secondary structure

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Multidimensional view of amyloid fibril nucleation in atomistic detail.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Evidence for novel beta-sheet structures in Iowa mutant beta-amyloid fibrils

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Thermodynamic selection of steric zipper patterns in the amyloid cross-beta spine

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Relationship between population of the fibril-prone conformation in the monomeric state and oligomer formation times of peptides: insights from all-atom simulations.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Replica exchange molecular dynamics simulations of coarse-grained proteins in implicit solvent

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Coarse-grained protein molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A three-stage kinetic model of amyloid fibrillation

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A new structural model of Aβ40 fibrils.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Impact of Thermostats on Folding and Aggregation Properties of Peptides Using the Optimized Potential for Efficient Structure Prediction Coarse-Grained Model.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A coarse-grained protein force field for folding and structure prediction.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

The conformations of the amyloid-beta (21-30) fragment can be described by three families in solution

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

PEP-FOLD: an online resource for de novo peptide structure prediction.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

A fast method for large-scale de novo peptide and miniprotein structure prediction.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Following the aggregation of amyloid-forming peptides by computer simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structures of soluble amyloid oligomers from computer simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structural diversity of the soluble trimers of the human amylin(20-29) peptide revealed by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structures and thermodynamics of Alzheimer's amyloid-beta Abeta(16-35) monomer and dimer by replica exchange molecular dynamics simulations: implication for full-length Abeta fibrillation.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structures of Aβ17-42 trimers in isolation and with five small-molecule drugs using a hierarchical computational procedure

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Improved prediction of protein side-chain conformations with SCWRL4

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

GROMACS: fast, flexible, and free

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Knowledge-based protein secondary structure assignment

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Essential dynamics of proteins

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

In Silico Assembly of Alzheimer's Aβ16-22Peptide into β-Sheets

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Experimental evidence for the reorganization of beta-strands within aggregates of the Abeta(16-22) peptide.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Computational simulations of the early steps of protein aggregation

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Low molecular weight oligomers of amyloid peptides display beta-barrel conformations: a replica exchange molecular dynamics study in explicit solvent

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Atomic View of a Toxic Amyloid Small Oligomer

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Role of the region 23-28 in Abeta fibril formation: insights from simulations of the monomers and dimers of Alzheimer's peptides Abeta40 and Abeta42.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Distinct Morphologies for Amyloid Beta Protein Monomer: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Distinct Dimerization for Various Alloforms of the Amyloid-Beta Protein: Aβ1–40, Aβ1–42, and Aβ1–40(D23N)

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Structural basis of β-amyloid-dependent synaptic dysfunctions

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Sequence Dependence of Amyloid Fibril Formation: Insights from Molecular Dynamics Simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Insights into stability and toxicity of amyloid-like oligomers by replica exchange molecular dynamics analyses.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Driving forces and structural determinants of steric zipper peptide oligomer formation elucidated by atomistic simulations.

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Fibrillization propensity for short designed hexapeptides predicted by computer simulation

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Pathway complexity of Alzheimer's beta-amyloid Abeta16-22 peptide assembly

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Mapping the conformational dynamics and pathways of spontaneous steric zipper Peptide oligomerization

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

VMD: visual molecular dynamics

1 reference

https://api.crossref.org/works/10.1063%2F1.4732761

21 January 2018

Identifiers

10.1063/1.4732761

0 references

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q57840256&oldid=1045003185"