(Q58776214)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

title

Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Luyi Tian

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Melanie Bahlo

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

author name string

Ingrid Lönnstedt

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

Milica Ng

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

language of work or name

English

0 references

publication date

15 August 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

page(s)

1297

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

23 April 2020

copyright license

start time

19 December 2018

1 reference

April 2022 Public Data File from Crossref

Creative Commons Attribution 4.0 International

start time

15 August 2018

1 reference

April 2022 Public Data File from Crossref

0 references

0 references

scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

SIMLR: A Tool for Large-Scale Genomic Analyses by Multi-Kernel Learning.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Multiplexed droplet single-cell RNA-sequencing using natural genetic variation

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Linnorm: improved statistical analysis for single cell RNA-seq expression data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

SC3: consensus clustering of single-cell RNA-seq data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Visualizing the structure of RNA-seq expression data using grade of membership models.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Comparative Analysis of Single-Cell RNA Sequencing Methods.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Scaling single-cell genomics from phenomenology to mechanism

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Massively parallel digital transcriptional profiling of single cells

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Patterns of ribosomal protein expression specify normal and malignant human cells.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Haemopedia: An Expression Atlas of Murine Hematopoietic Cells

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Single-cell messenger RNA sequencing reveals rare intestinal cell types

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

STAR: ultrafast universal RNA-seq aligner

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Aging is associated with a rapid decline in frequency, alterations in subset composition, and enhanced Th2 response in CD1d-restricted NKT cells from human peripheral blood.

30 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6124389

Proportion of peripheral blood and decidual CD4(+) CD25(bright) regulatory T cells in pre-eclampsia

30 November 2018

1 reference

12 December 2020

Integrating single-cell transcriptomic data across different conditions, technologies, and species

1 reference

12 December 2020

1 reference

12 December 2020

A systematic performance evaluation of clustering methods for single-cell RNA-seq data

1 reference

12 December 2020

10.12688/F1000RESEARCH.15809.1

Identifiers

DOI

0 references

10.12688/F1000RESEARCH.15809.2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30228881%20AND%20SRC:MED&resulttype=core&format=json

23 April 2020

PubMed publication ID

30228881

1 reference