(Q91865441)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

title

Next-generation characterization of the Cancer Cell Line Encyclopedia (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Hong Tiv

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Dmitriy Sonkin

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Francisca Vazquez

54

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Gordon B. Mills

64

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

67

Levi A Garraway

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

66

Todd R Golub

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

50

Marcin Imielinski

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

62

William C Hahn

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

53

Aviad Tsherniak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

65

Jesse S Boehm

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

17

Barbara A Weir

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

52

Andrew D Cherniack

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

57

David M Weinstock

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

author name string

Franklin W Huang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Judit Jané-Valbuena

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Gregory V Kryukov

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Christopher C Lo

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

E Robert McDonald

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jordi Barretina

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Ellen T Gelfand

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Craig M Bielski

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Haoxin Li

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Kevin Hu

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Alexander Y Andreev-Drakhlin

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jaegil Kim

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Julian M Hess

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Brian J Haas

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

François Aguet

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Michael V Rothberg

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Brenton R Paolella

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Michael S Lawrence

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Rehan Akbani

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Yiling Lu

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Prafulla C Gokhale

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Antoine de Weck

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Ali Amin Mansour

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Coyin Oh

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Juliann Shih

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Kevin Hadi

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Yanay Rosen

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jonathan Bistline

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Kavitha Venkatesan

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Anupama Reddy

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Manway Liu

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Joseph Lehar

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Joshua M Korn

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Dale A Porter

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Michael D Jones

39

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Javad Golji

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Giordano Caponigro

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jordan E Taylor

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Caitlin M Dunning

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Amanda L Creech

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Allison C Warren

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

James M McFarland

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Mahdi Zamanighomi

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Audrey Kauffmann

48

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Nicolas Stransky

49

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Yosef E Maruvka

51

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Jacob D Jaffe

55

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Andrew A Lane

56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Cory M Johannessen

58

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Michael P Morrissey

59

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Frank Stegmeier

60

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Robert Schlegel

61

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

Gad Getz

63

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

William R Sellers

68

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

language of work or name

English

0 references

publication date

8 May 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

Nature

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

volume

569

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

page(s)

503-508

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

issue

7757

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

25 April 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/6697103

based on heuristic

inferred from PubMed Central ID database lookup

cites work

The landscape of cancer cell line metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Genetic and transcriptional evolution alters cancer cell line drug response

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Distinct mutational signatures characterize concurrent loss of polymerase proofreading and mismatch repair.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

SvABA: genome-wide detection of structural variants and indels by local assembly.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Genetic effects on gene expression across human tissues

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Analysis of somatic microsatellite indels identifies driver events in human tumors.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Defining a Cancer Dependency Map.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

The allosteric inhibitor ABL001 enables dual targeting of BCR-ABL1.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Characterization of Human Cancer Cell Lines by Reverse-phase Protein Arrays

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Consistency in drug response profiling.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Drug response consistency in CCLE and CGP.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Consistency in large pharmacogenomic studies.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Analysis of protein-coding genetic variation in 60,706 humans

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

A landscape of pharmacogenomic interactions in cancer.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Allosteric inhibition of SHP2 phosphatase inhibits cancers driven by receptor tyrosine kinases

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Reproducible pharmacogenomic profiling of cancer cell line panels.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell lines

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Whole-genome sequencing reveals activation-induced cytidine deaminase signatures during indolent chronic lymphocytic leukaemia evolution

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Antisense oligonucleotide-mediated MDM4 exon 6 skipping impairs tumor growth

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Pharmacogenomic agreement between two cancer cell line data sets.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Aberrant RNA splicing in cancer; expression changes and driver mutations of splicing factor genes

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

limma powers differential expression analyses for RNA-sequencing and microarray studies

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Detained introns are a novel, widespread class of post-transcriptionally spliced introns

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Building the Connectivity Map of epigenetics: chromatin profiling by quantitative targeted mass spectrometry.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Integrated genomic characterization of papillary thyroid carcinoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

STRING v10: protein-protein interaction networks, integrated over the tree of life

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

A pan-cancer proteomic perspective on The Cancer Genome Atlas.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Inconsistency in large pharmacogenomic studies

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

A melanocyte lineage program confers resistance to MAP kinase pathway inhibition

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Global chromatin profiling reveals NSD2 mutations in pediatric acute lymphoblastic leukemia

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Targeting lactate metabolism for cancer therapeutics

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Charting a dynamic DNA methylation landscape of the human genome

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Highly recurrent TERT promoter mutations in human melanoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

STAR: ultrafast universal RNA-seq aligner

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

MDM4 is a key therapeutic target in cutaneous melanoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Absolute quantification of somatic DNA alterations in human cancer

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

RNA-SeQC: RNA-seq metrics for quality control and process optimization

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Somatic deletions of genes regulating MSH2 protein stability cause DNA mismatch repair deficiency and drug resistance in human leukemia cells

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Regularization Paths for Generalized Linear Models via Coordinate Descent

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Of proteins and RNA: the RNase P/MRP family

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Heterodimerization of the human RNase P/MRP subunits Rpp20 and Rpp25 is a prerequisite for interaction with the P3 arm of RNase MRP RNA.

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

MicroRNA expression profiles classify human cancers

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

A novel MDMX transcript expressed in a variety of transformed cell lines encodes a truncated protein with potent p53 repressive activity

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Mismatch repair deficiency associated with overexpression of the MSH3 gene

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

Silencing of the VHL tumor-suppressor gene by DNA methylation in renal carcinoma

23 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6697103

TERT promoter mutations and monoallelic activation of TERT in cancer

23 February 2021

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41586-019-1186-3

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41586-019-1186-3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31068700%20AND%20SRC:MED&resulttype=core&format=json

25 April 2020

1 reference