(Q26781885)

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Non-coding RNAs: regulators of disease

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The Structure and Function of Chromatin

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A translational profiling approach for the molecular characterization of CNS cell types

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

PNPASE regulates RNA import into mitochondria

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

YY1 tethers Xist RNA to the inactive X nucleation center

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Development and applications of CRISPR-Cas9 for genome engineering

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A micropeptide encoded by a putative long noncoding RNA regulates muscle performance

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Systematic discovery of Xist RNA binding proteins

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A link between RNA metabolism and silencing affecting Arabidopsis development.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Single-cell analysis reveals that noncoding RNAs contribute to clonal heterogeneity by modulating transcription factor recruitment

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Mapping the genome landscape using tiling array technology

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Transcriptional regulatory functions of nuclear long noncoding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The long non-coding RNA HOTAIR promotes the proliferation of serous ovarian cancer cells through the regulation of cell cycle arrest and apoptosis

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Applications of DNA tiling arrays for whole-genome analysis

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

3S: shotgun secondary structure determination of long non-coding RNAs.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Non–coding RNA genes and the modern RNA world

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Architecture and secondary structure of an entire HIV-1 RNA genome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Genome-wide measurement of RNA secondary structure in yeast

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Topological domains in mammalian genomes identified by analysis of chromatin interactions

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Landscape of transcription in human cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Extensive transcriptional heterogeneity revealed by isoform profiling

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Landscape and variation of RNA secondary structure across the human transcriptome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Structural imprints in vivo decode RNA regulatory mechanisms

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Toward global RNA structure analysis

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Targeted RNA sequencing reveals the deep complexity of the human transcriptome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The regulated retrotransposon transcriptome of mammalian cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Highly multiplexed and strand-specific single-cell RNA 5' end sequencing.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

RNA regulation: a new genetics?

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Regulation of X-chromosome inactivation by the X-inactivation centre.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Understanding the transcriptome through RNA structure

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Non-coding RNAs in human disease

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Sequencing depth and coverage: key considerations in genomic analyses

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Intronic RNAs mediate EZH2 regulation of epigenetic targets

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Exon-intron circular RNAs regulate transcription in the nucleus.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Junk DNA and the long non-coding RNA twist in cancer genetics.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Quantitative transcriptomics using designed primer-based amplification

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Technical variations in low-input RNA-seq methodologies

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Short interfering RNAs can induce unexpected and divergent changes in the levels of untargeted proteins in mammalian cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The genomic binding sites of a noncoding RNA.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The Pfam protein families database

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Global analysis of the mammalian RNA degradome reveals widespread miRNA-dependent and miRNA-independent endonucleolytic cleavage

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Spreading of X chromosome inactivation via a hierarchy of defined Polycomb stations

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Antisense transcription in the mammalian transcriptome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The transcriptional landscape of the mammalian genome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

RNA maps reveal new RNA classes and a possible function for pervasive transcription

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Divergent transcription from active promoters

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Long noncoding RNA as modular scaffold of histone modification complexes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Serial analysis of gene expression

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

MicroRNA-encoding long non-coding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Genomewide characterization of non-polyadenylated RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Circular RNAs: diversity of form and function

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

2-D structure of the A region of Xist RNA and its implication for PRC2 association

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Clusters of internally primed transcripts reveal novel long noncoding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

p53 activation by knockdown technologies

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The genetic signatures of noncoding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

The case for junk DNA

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Human cancer long non-coding RNA transcriptomes

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Targeting of >1.5 Mb of human DNA into the mouse X chromosome reveals presence of cis-acting regulators of epigenetic silencing

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Efficient in vivo deletion of a large imprinted lncRNA by CRISPR/Cas9.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021

Long non-coding RNAs as a source of new peptides

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2015.10.010

7 January 2021