(Q27496608)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

RegPrecise 3.0--a resource for genome-scale exploration of transcriptional regulation in bacteria (English)

1 reference

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29 February 2020

3

1 reference

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29 February 2020

Semen Leyn

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Marat D. Kazanov

7

1 reference

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29 February 2020

William Riehl

8

1 reference

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29 February 2020

Adam Arkin

9

1 reference

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29 February 2020

Dmitry Rodionov

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

10

Inna Dubchak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Pavel S Novichkov

1

1 reference

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29 February 2020

Alexey E Kazakov

2

1 reference

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29 February 2020

Galina Y Kovaleva

5

1 reference

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29 February 2020

Roman A Sutormin

6

1 reference

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29 February 2020

language of work or name

English

0 references

publication date

1 November 2013

1 reference

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29 February 2020

1 reference

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29 February 2020

volume

14

1 reference

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29 February 2020

issue

1

0 references

page(s)

745

1 reference

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https://scigraph.springernature.com/pub.10.1186/1471-2164-14-745

29 February 2020

exact match

0 references

cites work

The Pfam protein families database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Infernal 1.0: inference of RNA alignments

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Rfam: updates to the RNA families database

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

The COG database: an updated version includes eukaryotes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

A comparative genomics approach to prediction of new members of regulons

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Control of proteobacterial central carbon metabolism by the HexR transcriptional regulator: a case study in Shewanella oneidensis.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Transcription factor family-based reconstruction of singleton regulons and study of the Crp/Fnr, ArsR, and GntR families in Desulfovibrionales genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Phenylacetic acid catabolism and its transcriptional regulation in Corynebacterium glutamicum

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

GLAMM: Genome-Linked Application for Metabolic Maps

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

MicrobesOnline: an integrated portal for comparative and functional genomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Comparative genomics of regulation of fatty acid and branched-chain amino acid utilization in proteobacteria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Transcriptional regulation of NAD metabolism in bacteria: NrtR family of Nudix-related regulators.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Predicting regulons and their cis-regulatory motifs by comparative genomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3840689

Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.

2 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-745

Identification of a bacterial regulatory system for ribonucleotide reductases by phylogenetic profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-745

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-745

Tetraalkylammonium derivatives as real-time PCR enhancers and stabilizers of the qPCR mixtures containing SYBR Green I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-745

Transcriptional regulation of pentose utilisation systems in the Bacillus/Clostridium group of bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-745

21 January 2018

Identifiers

DOI

10.1186/1471-2164-14-745

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

29 February 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-14-745

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24175918%20AND%20SRC:MED&resulttype=core&format=json