(Q28468684)

Ralf Mikut

1

0 references

Periklis Pantazis

Periklis Pantazis

10

0 references

Wolfgang Driever

Wolfgang Driever

3

0 references

Nadine Peyrieras

Nadine Peyriéras

15

0 references

María J Ledesma-Carbayo

María J Ledesma-Carbayo

7

0 references

Raphaël Marée

Raphaël Marée

8

0 references

Uwe Strähle

14

Uwe Strähle

0 references

author name string

Thomas Dickmeis

2

0 references

Pierre Geurts

4

0 references

Fred A Hamprecht

5

0 references

Bernhard X Kausler

6

0 references

Karol Mikula

9

0 references

Olaf Ronneberger

11

0 references

Rainer Stotzka

describes a project that uses

13

0 references

language of work or name

English

0 references

publication date

September 2013

0 references

published in

Zebrafish

0 references

volume

10

0 references

issue

3

0 references

page(s)

401-21

0 references

ImageJ

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3760023/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Automated phenotype recognition for zebrafish embryo based in vivo high throughput toxicity screening of engineered nano-materials

6 April 2017

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PhOTO zebrafish: a transgenic resource for in vivo lineage tracing during development and regeneration

19 March 2017

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OMERO: flexible, model-driven data management for experimental biology

19 March 2017

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Automated reporter quantification in vivo: high-throughput screening method for reporter-based assays in zebrafish

19 March 2017

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Three-dimensional neurophenotyping of adult zebrafish behavior

19 March 2017

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A high-throughput screen for tuberculosis progression

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Metadata matters: access to image data in the real world

19 March 2017

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Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

19 March 2017

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19 March 2017

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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

19 March 2017

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Methods for cell and particle tracking

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Optical sectioning deep inside live embryos by selective plane illumination microscopy

7 April 2017

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Identification of nonvisual photomotor response cells in the vertebrate hindbrain

7 April 2017

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Quantitative analysis of embryogenesis: a perspective for light sheet microscopy

29 September 2017

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Computational techniques in zebrafish image processing and analysis

29 September 2017

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High-throughput screening of zebrafish embryos using automated heart detection and imaging

29 September 2017

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Surface functionalization of barium titanate SHG nanoprobes for in vivo imaging in zebrafish

29 September 2017

1 reference

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Facilitating drug discovery: an automated high-content inflammation assay in zebrafish

29 September 2017

1 reference

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Biological imaging software tools

29 September 2017

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Icy: an open bioimage informatics platform for extended reproducible research.

29 September 2017

1 reference

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ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains.

29 September 2017

1 reference

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Brain-wide neuronal dynamics during motor adaptation in zebrafish.

29 September 2017

1 reference

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Automated zebrafish chorion removal and single embryo placement: optimizing throughput of zebrafish developmental toxicity screens

29 September 2017

1 reference

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Wavelet-based image fusion in multi-view three-dimensional microscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Ketamine induces motor neuron toxicity and alters neurogenic and proneural gene expression in zebrafish

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A high-content screening assay in transgenic zebrafish identifies two novel activators of fgf signaling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

In vivo imaging and quantitative analysis of changes in axon length using transgenic zebrafish embryos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Image analysis for understanding embryo development: a bridge from microscopy to biological insights.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated analysis of zebrafish images for phenotypic changes in drug discovery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Zebrafish as a model to study cardiac development and human cardiac disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated feature detection and imaging for high-resolution screening of zebrafish embryos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

BrainAligner: 3D registration atlases of Drosophila brains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Comprehensive catecholaminergic projectome analysis reveals single-neuron integration of zebrafish ascending and descending dopaminergic systems.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Multicolor Brainbow imaging in zebrafish

29 September 2017

1 reference

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A high-throughput chemically induced inflammation assay in zebrafish

29 September 2017

1 reference

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Second harmonic generating (SHG) nanoprobes for in vivo imaging

29 September 2017

1 reference

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High-throughput in vivo vertebrate screening

29 September 2017

1 reference

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3D early embryogenesis image filtering by nonlinear partial differential equations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

The zebrafish as a model for cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Rapid behavior-based identification of neuroactive small molecules in the zebrafish

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Bisque: a platform for bioimage analysis and management

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Chemical modifier screen identifies HDAC inhibitors as suppressors of PKD models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Semi-automated Optical Heartbeat Analysis of small hearts.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Zebrafish embryos as models for embryotoxic and teratological effects of chemicals.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A new method for detection and quantification of heartbeat parameters in Drosophila, zebrafish, and embryonic mouse hearts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated image-based phenotypic analysis in zebrafish embryos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Noninvasive technique for measurement of heartbeat regularity in zebrafish (Danio rerio) embryos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated identification of neurons in 3D confocal datasets from zebrafish brainstem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Zebrafish as a new animal model for movement disorders

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Computerized image analysis for quantitative neuronal phenotyping in zebrafish

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A computer image processing system for quantification of zebrafish behavior

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A chemical screening system for glucocorticoid stress hormone signaling in an intact vertebrate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Fully automated cellular-resolution vertebrate screening platform with parallel animal processing.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Report of the Second European Zebrafish Principal Investigator Meeting in Karlsruhe, Germany, March 21-24, 2012.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A modular, low-cost robot for zebrafish handling.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated high-throughput neurophenotyping of zebrafish social behavior.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

BioImageXD: an open, general-purpose and high-throughput image-processing platform.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

3D+t morphological processing: applications to embryogenesis image analysis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Multiview deblurring for 3-D images from light-sheet-based fluorescence microscopy.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Image-based fluidic sorting system for automated Zebrafish egg sorting into multiwell plates.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Assessing the efficacy of low-level image content descriptors for computer-based fluorescence microscopy image analysis

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Interactive image segmentation based on level sets of probabilities.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Segmentation of 3D cell membrane images by PDE methods and its applications.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A High-Throughput Analysis Method to Detect Regions of Interest and Quantify Zebrafish Embryo Images

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Characterization of behavioral and endocrine effects of LSD on zebrafish.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Software for bead-based registration of selective plane illumination microscopy data

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Locomotor activity in zebrafish embryos: a new method to assess developmental neurotoxicity

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Cells segmentation from 3-D confocal images of early zebrafish embryogenesis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Acute neuroactive drug exposures alter locomotor activity in larval zebrafish.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Automated analysis of behavior in zebrafish larvae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

XuvTools: free, fast and reliable stitching of large 3D datasets

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

An automated method for cell detection in zebrafish.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

ZFIQ: a software package for zebrafish biology.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Zebrafish offer the potential for a primary screen to identify a wide variety of potential anticonvulsants

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760023

Identification and real-time imaging of a myc-expressing neutrophil population involved in inflammation and mycobacterial granuloma formation in zebrafish

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23758125

12 December 2020

inferred from PubMed ID database lookup

Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23758125

12 December 2020

inferred from PubMed ID database lookup

Automated measurement of zebrafish larval movement

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23758125

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1089/ZEB.2013.0886

1 reference

1 reference

1 reference

PubMed publication ID

23758125

1 reference