(Q30490173)

21 August 2017

IMG/M: integrated genome and metagenome comparative data analysis system (English)

1 reference

21 August 2017

0 references

15

1 reference

PubMed publication ID

22 June 2017

16

1 reference

PubMed publication ID

22 June 2017

11

Neha Varghese

0 references

Marcel Huntemann

10

object named as

Marcel Huntemann

1 reference

21 August 2017

4

Krishna Palaniappan

1 reference

21 August 2017

6

Manoj Pillay

1 reference

21 August 2017

2

Victor M Markowitz

1 reference

21 August 2017

12

Michalis Hadjithomas

1 reference

21 August 2017

5

Ernest Szeto

1 reference

21 August 2017

9

Evan Andersen

1 reference

21 August 2017

13

Kristin Tennessen

1 reference

21 August 2017

8

Jinghua Huang

1 reference

21 August 2017

I-Min A Chen

1

1 reference

21 August 2017

Ken Chu

3

1 reference

21 August 2017

Anna Ratner

7

1 reference

21 August 2017

Torben Nielsen

14

1 reference

21 August 2017

language of work or name

English

0 references

publication date

13 October 2016

1 reference

21 August 2017

Nucleic Acids Research

1 reference

21 August 2017

45

1 reference

21 August 2017

D1

1 reference

21 August 2017

D507-D516

1 reference

Uncovering Earth’s virome

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

The Pfam protein families database: towards a more sustainable future

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

KEGG as a reference resource for gene and protein annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Microbial species delineation using whole genome sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Expanded microbial genome coverage and improved protein family annotation in the COG database

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Stop codon reassignments in the wild

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG 4 version of the integrated microbial genomes comparative analysis system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG/M 4 version of the integrated metagenome comparative analysis system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Infernal 1.1: 100-fold faster RNA homology searches

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Improving microbial genome annotations in an integrated database context

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

TIGRFAMs and Genome Properties in 2013.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG: the Integrated Microbial Genomes database and comparative analysis system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Adaptive seeds tame genomic sequence comparison

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Prodigal: prokaryotic gene recognition and translation initiation site identification

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

IMG ER: a system for microbial genome annotation expert review and curation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Infernal 1.0: inference of RNA alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Locating proteins in the cell using TargetP, SignalP and related tools

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Rfam: annotating non-coding RNAs in complete genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Evaluation of methods for the prediction of membrane spanning regions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Protein interaction maps for complete genomes based on gene fusion events

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5210632

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

HMMER web server: 2015 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

InterProScan 5: genome-scale protein function classification

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

Algorithm 457: finding all cliques of an undirected graph

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

Microbiome Data Science: Understanding Our Microbial Planet

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKW929

21 January 2018

Identifiers

DOI

10.1093/NAR/GKW929

1 reference

journals/nar/ChenMCPSPRHAHVH17

21 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

21 August 2017

PubMed publication ID

27738135

1 reference