(Q31092204)

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jSplice: a high-performance method for accurate prediction of alternative splicing events and its application to large-scale renal cancer transcriptome data

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scholarly article

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Europe PubMed Central

28 June 2017

jSplice: a high-performance method for accurate prediction of alternative splicing events and its application to large-scale renal cancer transcriptome data (English)

1 reference

Europe PubMed Central

28 June 2017

alternative mRNA splicing, via spliceosome

1 reference

based on heuristic

inferred from title

Yann Christinat

1

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27153587%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Rafał Pawłowski

2

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Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27153587%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Wilhelm Krek

3

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27153587%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

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publication date

21 March 2016

1 reference

Europe PubMed Central

28 June 2017

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Europe PubMed Central

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5 June 2020

32

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5 June 2020

14

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5 June 2020

2111-2119

1 reference

Europe PubMed Central

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5 June 2020

Detecting differential usage of exons from RNA-seq data

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

SplicingCompass: differential splicing detection using RNA-seq data

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Conservation of an RNA regulatory map between Drosophila and mammals

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Myosin VI isoform localized to clathrin-coated vesicles with a role in clathrin-mediated endocytosis

1 reference

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21 January 2018

STAR: ultrafast universal RNA-seq aligner

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21 January 2018

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

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Ubiquitin ligase Nedd4L targets activated Smad2/3 to limit TGF-beta signaling

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21 January 2018

Computational methods for transcriptome annotation and quantification using RNA-seq

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A DNMT3B alternatively spliced exon and encoded peptide are novel biomarkers of human pluripotent stem cells

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21 January 2018

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

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21 January 2018

Alternative expression analysis by RNA sequencing

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21 January 2018

Myosin VI: two distinct roles in endocytosis

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21 January 2018

Regulation of microtubule stability by the von Hippel-Lindau tumour suppressor protein pVHL.

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21 January 2018

DiffSplice: the genome-wide detection of differential splicing events with RNA-seq.

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21 January 2018

Analysis and design of RNA sequencing experiments for identifying isoform regulation

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21 January 2018

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

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21 January 2018

Multiple alternative splicing markers for ovarian cancer

1 reference

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21 January 2018

Src-family and Syk kinases in activating and inhibitory pathways in innate immune cells: signaling cross talk

1 reference

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21 January 2018

Mnk2 alternative splicing modulates the p38-MAPK pathway and impacts Ras-induced transformation

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

The SYK tyrosine kinase: a crucial player in diverse biological functions

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

A genomic view of alternative splicing

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Motor neuron disease. SMN2 splicing modifiers improve motor function and longevity in mice with spinal muscular atrophy

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Hallmarks of alternative splicing in cancer

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Cancer cells express aberrant DNMT3B transcripts encoding truncated proteins

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

RNA sequencing: advances, challenges and opportunities

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Alternative splicing of SYK regulates mitosis and cell survival

1 reference

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21 January 2018

BEDTools: a flexible suite of utilities for comparing genomic features

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21 January 2018

Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching

1 reference

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21 January 2018

Overexpression of a splice variant of DNA methyltransferase 3b, DNMT3b4, associated with DNA hypomethylation on pericentromeric satellite regions during human hepatocarcinogenesis

1 reference

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21 January 2018

Identification of the NEDD4L gene as a prognostic marker by integrated microarray analysis of copy number and gene expression profiling in non-small cell lung cancer

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Pre-mRNA splicing in disease and therapeutics

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki)

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

NEDD4L is downregulated in colorectal cancer and inhibits canonical WNT signaling

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

pVHL and GSK3beta are components of a primary cilium-maintenance signalling network

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Differential analysis of gene regulation at transcript resolution with RNA-seq

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

1 reference

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21 January 2018

HIF1α deubiquitination by USP8 is essential for ciliogenesis in normoxia

1 reference

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21 January 2018

Myosin VI and its cargo adaptors - linking endocytosis and autophagy

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Dnmt3b is a haploinsufficient tumor suppressor gene in Myc-induced lymphomagenesis

1 reference

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21 January 2018

Cancer-associated regulation of alternative splicing

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Alternative isoform regulation in human tissue transcriptomes

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Delta DNMT3B variants regulate DNA methylation in a promoter-specific manner.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTW145

21 January 2018

Transmembrane and coiled-coil domain family 1 is a novel protein of the endoplasmic reticulum

1 reference

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21 January 2018

Tumor-specific isoform switch of the fibroblast growth factor receptor 2 underlies the mesenchymal and malignant phenotypes of clear cell renal cell carcinomas

1 reference

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21 January 2018

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