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Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites
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scholarly article
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
title
Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites
(English)
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
author
Timothy E. Reddy
object named as
Timothy E Reddy
series ordinal
1
0 references
Boris Shakhnovich
series ordinal
3
object named as
Boris E Shakhnovich
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
author name string
Charles DeLisi
series ordinal
2
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
publication date
10 April 2007
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
published in
PLOS Computational Biology
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
volume
3
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
page(s)
e90
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
issue
5
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
copyright license
Creative Commons Attribution 4.0 International
start time
11 May 2007
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
cites work
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Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes
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Scoring functions for transcription factor binding site prediction
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21 June 2018
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MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
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Transcriptional regulatory code of a eukaryotic genome
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21 June 2018
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21 June 2018
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
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ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
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21 June 2018
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21 June 2018
Transcriptional regulatory networks in Saccharomyces cerevisiae
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21 June 2018
Subtle motifs: defining the limits of motif finding algorithms
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21 June 2018
Finding motifs in the twilight zone
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21 June 2018
Combining chromatin immunoprecipitation and DNA footprinting: a novel method to analyze protein-DNA interactions in vivo
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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
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21 June 2018
DNA binding sites: representation and discovery
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21 June 2018
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21 June 2018
Collective dynamics of 'small-world' networks
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21 June 2018
Specificity, free energy and information content in protein-DNA interactions
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PubMed Central
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21 June 2018
Searching databases of conserved sequence regions by aligning protein multiple-alignments
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21 June 2018
Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment
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21 June 2018
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
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21 June 2018
Identification of common molecular subsequences
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Consensus patterns in DNA.
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21 June 2018
MotifCut: regulatory motifs finding with maximum density subgraphs
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31 October 2018
Intensity and coherence of motifs in weighted complex networks.
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31 October 2018
Computational discovery of gene modules and regulatory networks
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31 October 2018
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.
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Application of the chromatin immunoprecipitation method to identify in vivo protein-DNA associations in fission yeast.
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Evaluation of gene structure prediction programs.
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31 October 2018
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17500587
retrieved
12 December 2020
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Identifiers
DOI
10.1371/JOURNAL.PCBI.0030090
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
DBLP publication ID
journals/ploscb/ReddyDS07
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMCID
1866359
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
PubMed ID
17500587
1 reference
stated in
Q5412157
PubMed ID
17500587
retrieved
25 July 2017
ResearchGate publication ID
6330735
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