(Q33799089)

29 July 2017

title

Induced fit or conformational selection for RNA/U1A folding (English)

1 reference

29 July 2017

Fang Qin

1

1 reference

29 July 2017

Yue Chen

2

1 reference

29 July 2017

Maoying Wu

3

1 reference

29 July 2017

Yixue Li

4

1 reference

29 July 2017

Jian Zhang

5

1 reference

29 July 2017

Hai-Feng Chen

6

1 reference

29 July 2017

language of work or name

English

0 references

publication date

30 March 2010

1 reference

29 July 2017

1 reference

29 July 2017

volume

16

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29 July 2017

issue

5

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29 July 2017

page(s)

1053-1061

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Molecular dynamics simulation of phosphorylated KID post-translational modification

29 July 2017

cites work

1 reference

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Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

4 July 2018

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Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms

4 July 2018

1 reference

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Structural insight into RNA hairpin folding intermediates

4 July 2018

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

4 July 2018

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Microscopic reversibility of protein folding in molecular dynamics simulations of the engrailed homeodomain

4 July 2018

1 reference

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Binding-induced folding of a natively unstructured transcription factor.

4 July 2018

1 reference

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A study of collective atomic fluctuations and cooperativity in the U1A-RNA complex based on molecular dynamics simulations

4 July 2018

1 reference

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Direct observation of microscopic reversibility in single-molecule protein folding

4 July 2018

1 reference

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Force field influences in beta-hairpin folding simulations

4 July 2018

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Application of a Theory of Enzyme Specificity to Protein Synthesis

4 July 2018

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The role of positively charged amino acids and electrostatic interactions in the complex of U1A protein and U1 hairpin II RNA

4 July 2018

1 reference

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Ensemble versus single-molecule protein unfolding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Induced fit of RNA on binding the L7Ae protein to the kink-turn motif

4 July 2018

1 reference

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4 July 2018

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Mechanical unfolding of RNA hairpins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations.

4 July 2018

1 reference

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RNA folding and unfolding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Solvation in protein folding analysis: Combination of theoretical and experimental approaches

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

RNA backbone is rotameric

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Electrostatic interactions in a peptide--RNA complex.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics simulations of protein folding from the transition state

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Protein folding and unfolding at atomic resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Structured disorder and conformational selection

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Three key residues form a critical contact network in a protein folding transition state

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Folding and binding cascades: dynamic landscapes and population shifts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Folding funnels and binding mechanisms

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Folding and binding cascades: shifts in energy landscapes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics simulations of the complex between human U1A protein and hairpin II of U1 small nuclear RNA and of free RNA in solution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

A complex secondary structure in U1A pre-mRNA that binds two molecules of U1A protein is required for regulation of polyadenylation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Structure of spliceosomal snRNPs and their role in pre-mRNA splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Biochemical Mechanisms of Constitutive and Regulated Pre-mRNA Splicing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Searching for multiple folding pathways of a nearly symmetrical protein: temperature dependent phi-value analysis of the B domain of protein A.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Binding induced folding in p53-MDM2 complex

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Do collective atomic fluctuations account for cooperative effects? Molecular dynamics studies of the U1A-RNA complex

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics simulation studies of a protein-RNA complex with a selectively modified binding interface

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics and thermodynamics of protein-RNA interactions: mutation of a conserved aromatic residue modifies stacking interactions and structural adaptation in the U1A-stem loop 2 RNA complex.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Molecular dynamics studies of U1A-RNA complexes

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

BIOCHEMISTRY: How Do Proteins Interact?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Metastable states and folding free energy barriers

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2856877

Simulations of the dynamics at an RNA-protein interface

30 October 2018

1 reference

12 December 2020

Molecular dynamics simulation studies of induced fit and conformational capture in U1A-RNA binding: do molecular substates code for specificity?

1 reference

12 December 2020

Conformational diversity and protein evolution--a 60-year-old hypothesis revisited

1 reference

12 December 2020

Aggregation mechanism investigation of the GIFQINS cross-beta amyloid fibril

1 reference

12 December 2020

Induced fit for mRNA/TIS11d complex

1 reference

12 December 2020

Mechanism of Coupled Folding and Binding in the siRNA-PAZ Complex

1 reference

12 December 2020

Interaction of RNA hairpins with the human U1A N-terminal RNA binding domain

1 reference

12 December 2020

An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA binding domain from the human U1A protein

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2008110

1 reference

29 July 2017

1 reference

29 July 2017

1 reference