(Q34168526)

31 July 2017

title

A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity (English)

1 reference

31 July 2017

2

Basuthkar J Rao

1 reference

31 July 2017

1

Sandeep Chakraborty

1 reference

31 July 2017

language of work or name

English

0 references

publication date

16 February 2012

1 reference

31 July 2017

1 reference

31 July 2017

volume

7

1 reference

31 July 2017

issue

2

1 reference

31 July 2017

page(s)

e32011

1 reference

Creative Commons Attribution 4.0 International

31 July 2017

copyright license

start time

16 February 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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5 July 2018

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5 July 2018

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Protein promiscuity and its implications for biotechnology

5 July 2018

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Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.

5 July 2018

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A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

5 July 2018

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Protein engineers turned evolutionists

5 July 2018

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5 July 2018

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5 July 2018

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Enzyme promiscuity: mechanism and applications.

5 July 2018

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New algorithms and an in silico benchmark for computational enzyme design

5 July 2018

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Thermodynamics of neutral protein evolution

5 July 2018

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Evolution of enzyme superfamilies

5 July 2018

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Designed divergent evolution of enzyme function

5 July 2018

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Evolving strategies for enzyme engineering

5 July 2018

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Using a library of structural templates to recognise catalytic sites and explore their evolution in homologous families

5 July 2018

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Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity

5 July 2018

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The 'evolvability' of promiscuous protein functions

5 July 2018

1 reference

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PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

5 July 2018

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The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

5 July 2018

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Enzymes with extra talents: moonlighting functions and catalytic promiscuity

5 July 2018

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5 July 2018

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5 July 2018

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Electrostatics of nanosystems: application to microtubules and the ribosome

5 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Evolution of function in protein superfamilies, from a structural perspective.

5 July 2018

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5 July 2018

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EMBOSS: the European Molecular Biology Open Software Suite

5 July 2018

1 reference

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Catalytic promiscuity and the evolution of new enzymatic activities

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Recognition of spatial motifs in protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.

5 July 2018

1 reference

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5 July 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Classical electrostatics in biology and chemistry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

DNA and the neutral theory

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Structural plasticity broadens the specificity of an engineered protease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

5 July 2018

Evolution and tinkering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Enzyme recruitment in evolution of new function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

The subtle benefits of being promiscuous: adaptive evolution potentiated by enzyme promiscuity

5 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

Catalytic promiscuity in biocatalysis: using old enzymes to form new bonds and follow new pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

A quantitative index of substrate promiscuity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

Computational design of a biologically active enzyme

21 January 2018

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Engineering heme binding sites in monomeric rop.

21 January 2018

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Protein promiscuity: drug resistance and native functions--HIV-1 case

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

21 January 2018

Natural distribution.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

Catalysis by ribonuclease A is limited by the rate of substrate association

21 January 2018

1 reference

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Triosephosphate isomerase catalysis is diffusion controlled. Appendix: Analysis of triose phosphate equilibria in aqueous solution by 31P NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

Protein folds and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

A structural model of latent evolutionary potentials underlying neutral networks in proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Latent evolutionary potentials under the neutral mutational drift of an enzyme

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3281107

Electrostatics in the active site of an alpha-amylase

28 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0032011

Pseudoallelism and gene evolution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22359655

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conformational diversity and protein evolution--a 60-year-old hypothesis revisited

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22359655

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Enzyme catalytic promiscuity: the nonheme Fe2+ center of beta-diketone-cleaving dioxygenase Dke1 promotes hydrolysis of activated esters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22359655

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0032011

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference