(Q34413161)

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Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis.

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Exploring local immunological adaptation of two stickleback ecotypes by experimental infection and transcriptome-wide digital gene expression analysis (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

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experimental infection

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based on heuristic

inferred from title

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based on heuristic

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1

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Europe PubMed Central

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13 February 2020

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Martin Kalbe

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13 February 2020

Christophe Eizaguirre

2

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Christophe Eizaguirre

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13 February 2020

Manfred Milinski

5

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Manfred Milinski

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13 February 2020

author name string

Björn Rotter

3

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Europe PubMed Central

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13 February 2020

publication date

13 September 2012

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13 February 2020

Molecular Ecology

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

22

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Europe PubMed Central

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13 February 2020

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

774-786

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

describes a project that uses

object named as

Bioconductor package edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Dissecting molecular stress networks: identifying nodes of divergence between life-history phenotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Divergent selection on locally adapted major histocompatibility complex immune genes experimentally proven in the field.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

The genomic basis of adaptive evolution in threespine sticklebacks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Disease tolerance as a defense strategy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Rapid and adaptive evolution of MHC genes under parasite selection in experimental vertebrate populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Controlling gene expression in response to stress.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Ensembl BioMarts: a hub for data retrieval across taxonomic space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Digital gene expression analysis of gastrointestinal helminth resistance in Scottish blackface lambs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Quality control and preprocessing of metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Extent and scale of local adaptation in salmonid fishes: review and meta-analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Applications of next generation sequencing in molecular ecology of non-model organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Digital gene expression signatures for maize development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Manipulation of FASTQ data with Galaxy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

On the origin of species: insights from the ecological genomics of lake whitefish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Galaxy: a web-based genome analysis tool for experimentalists

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Genetics and ecological speciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Variable progress toward ecological speciation in parapatry: stickleback across eight lake-stream transitions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Different normalization strategies for microarray gene expression traits affect the heritability estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

A synthesis of experimental work on parasite local adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

One day is enough: rapid and specific host-parasite interactions in a stickleback-trematode system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Multivariate regression analysis of distance matrices for testing associations between gene expression patterns and related variables

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

How does gene expression clustering work?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Galaxy: a platform for interactive large-scale genome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Correction of sequence-based artifacts in serial analysis of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3579235

6 July 2018

Pathogens as potential selective agents in the wild.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Sex against virulence: the coevolution of parasitic diseases

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https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

MHC-based mate choice combines good genes and maintenance of MHC polymorphism.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Sequencing goes 454 and takes large-scale genomics into the wild

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Local differences in immunocompetence reflect resistance of sticklebacks against the eye fluke Diplostomum pseudospathaceum

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

The evolution of sex-specific immune defences.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-294X.2012.05756.X

21 January 2018

Habitat-specific adaptation of immune responses of stickleback (Gasterosteus aculeatus) lake and river ecotypes.

1 reference

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21 January 2018

Introduction. Ecological immunology

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21 January 2018

Next generation molecular ecology.

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21 January 2018

Rapid genetic divergence in postglacial populations of threespine stickleback (Gasterosteus aculeatus): the role of habitat type, drainage and geographical proximity

1 reference

https://pubmed.ncbi.nlm.nih.gov/22971109

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Quantitative Survey of Local Adaptation and Fitness Trade‐Offs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22971109

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/22971109

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Parasite Selection for Immunogenetic Optimality

1 reference

https://pubmed.ncbi.nlm.nih.gov/22971109

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/J.1365-294X.2012.05756.X

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22971109%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

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