(Q34530771)

2 August 2017

title

Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis (English)

1 reference

Yersinia pseudotuberculosis

2 August 2017

main subject

0 references

author

Peter F. Stadler

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Francesco Righetti

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Franz Narberhaus

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

9

Petra Dersch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Aaron M Nuss

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Christian Twittenhoff

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Sascha Beele

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Kristina Urban

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Sebastian Will

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Stephan H Bernhart

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

13 June 2016

1 reference

Proceedings of the National Academy of Sciences of the United States of America

2 August 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

7237-7242

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

Secondary Structure across the Bacterial Transcriptome Reveals Versatile Roles in mRNA Regulation and Function

8 June 2020

cites work

1 reference

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7 July 2018

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7 July 2018

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Transcriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs

7 July 2018

1 reference

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Structural imprints in vivo decode RNA regulatory mechanisms

7 July 2018

1 reference

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Coregulation of host-adapted metabolism and virulence by pathogenic yersiniae

7 July 2018

1 reference

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Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome

7 July 2018

1 reference

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Regulation of Pseudomonas aeruginosa virulence factors by two novel RNA thermometers.

7 July 2018

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How to find RNA thermometers

7 July 2018

1 reference

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RNA thermometer controls temperature-dependent virulence factor expression in Vibrio cholerae

7 July 2018

1 reference

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A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC

7 July 2018

1 reference

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Mod-seq: high-throughput sequencing for chemical probing of RNA structure

7 July 2018

1 reference

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Landscape and variation of RNA secondary structure across the human transcriptome

7 July 2018

1 reference

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

7 July 2018

1 reference

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The cytotoxic necrotizing factor of Yersinia pseudotuberculosis (CNFY) enhances inflammation and Yop delivery during infection by activation of Rho GTPases.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Yersinia pseudotuberculosis uses Ail and YadA to circumvent neutrophils by directing Yop translocation during lung infection

7 July 2018

1 reference

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Role for cis-acting RNA sequences in the temperature-dependent expression of the multiadhesive lig proteins in Leptospira interrogans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Cytotoxic necrotizing factor-Y boosts Yersinia effector translocation by activating Rac protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

RNA-mediated thermoregulation of iron-acquisition genes in Shigella dysenteriae and pathogenic Escherichia coli.

7 July 2018

1 reference

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Genome-wide mapping of RNA structure using nuclease digestion and high-throughput sequencing

7 July 2018

1 reference

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7 July 2018

A decade of riboswitches

1 reference

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Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Genome-wide measurement of RNA folding energies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Yersinia pestis Ail: multiple roles of a single protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Bacterial RNA thermometers: molecular zippers and switches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Concerted actions of a thermo-labile regulator and a unique intergenic RNA thermosensor control Yersinia virulence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Thermogenetic tools to monitor temperature-dependent gene expression in bacteria

7 July 2018

1 reference

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7 July 2018

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Regulation by small RNAs in bacteria: expanding frontiers

7 July 2018

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

7 July 2018

1 reference

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7 July 2018

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Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

7 July 2018

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Multiple layers of control govern expression of the Escherichia coli ibpAB heat-shock operon.

7 July 2018

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Genome-wide measurement of RNA secondary structure in yeast

7 July 2018

1 reference

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Ail binding to fibronectin facilitates Yersinia pestis binding to host cells and Yop delivery

7 July 2018

1 reference

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Intrinsic thermal sensing controls proteolysis of Yersinia virulence regulator RovA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

VARNA: Interactive drawing and editing of the RNA secondary structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

The Yersinia pestis Ail protein mediates binding and Yop delivery to host cells required for plague virulence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

A novel method for accurate operon predictions in all sequenced prokaryotes

7 July 2018

1 reference

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An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Temperature sensing in Yersinia pestis: translation of the LcrF activator protein is thermally regulated

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Extension inhibition analysis of translation initiation complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

The PqsR and RhlR transcriptional regulators determine the level of Pseudomonas quinolone signal synthesis in Pseudomonas aeruginosa by producing two different pqsABCDE mRNA isoforms.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Temperature triggers immune evasion by Neisseria meningitidis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Global analysis of RNA secondary structure in two metazoans.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4932938

Temperature-driven differential gene expression by RNA thermosensors

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27298343

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1523004113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27298343%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

1 reference