(Q34805030)

4 August 2017

title

Malleability of folding intermediates in the homeodomain superfamily (English)

1 reference

4 August 2017

3

R D Schaeffer

1 reference

4 August 2017

5

Alan R Fersht

1 reference

4 August 2017

4

Valerie Daggett

1 reference

4 August 2017

Wiktor Banachewicz

1

1 reference

4 August 2017

Tomasz L Religa

series ordinal

2

1 reference

4 August 2017

language of work or name

English

0 references

publication date

21 March 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

4 August 2017

published in

1 reference

4 August 2017

volume

108

1 reference

4 August 2017

issue

14

1 reference

4 August 2017

page(s)

5596-5601

1 reference

The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water

4 August 2017

cites work

1 reference

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Folding of the Pit1 homeodomain near the speed limit

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Kinetics of chain motions within a protein-folding intermediate

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

A Transient and Low-Populated Protein-Folding Intermediate at Atomic Resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Refolding the Engrailed Homeodomain: Structural Basis for the Accumulation of a Folding Intermediate

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding

8 July 2018

1 reference

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The helix turn helix motif as an ultrafast independently folding domain: The pathway of folding of Engrailed homeodomain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Identification and characterization of protein folding intermediates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Conformational entropy of alanine versus glycine in protein denatured states

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Malleability of protein folding pathways: a simple reason for complex behaviour

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

NMR analysis of the conformational properties of the trapped on-pathway folding intermediate of the bacterial immunity protein Im7.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Phi-value analysis and the nature of protein-folding transition states

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Demonstration of a low-energy on-pathway intermediate in a fast-folding protein by kinetics, protein engineering, and simulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Unifying features in protein-folding mechanisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

The complete folding pathway of a protein from nanoseconds to microseconds

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Weak alignment offers new NMR opportunities to study protein structure and dynamics.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Protein folding and unfolding at atomic resolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Kinetics of unfolding and refolding of proteins. I. Mathematical analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Improved detection of helix-turn-helix DNA-binding motifs in protein sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

Solution structure of a protein denatured state and folding intermediate

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Simulation and experiment conspire to reveal cryptic intermediates and a slide from the nucleation-condensation to framework mechanism of folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Structure of the transition state for folding of a protein derived from experiment and simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Scanning malleable transition state ensembles: comparing theory and experiment for folding protein U1A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Methods for molecular dynamics simulations of protein folding/unfolding in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Development of the multiple sequence approximation within the AGADIR model of alpha-helix formation: comparison with Zimm-Bragg and Lifson-Roig formalisms.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3078393

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

26 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Movement of the position of the transition state in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1101752108

Exploring the energy surface of protein folding by structure-reactivity relationships and engineered proteins: observation of Hammond behavior for the gross structure of the transition state and anti-Hammond behavior for structural elements for unfo

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21422286

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1101752108

1 reference

4 August 2017

0 references

1 reference

4 August 2017

1 reference