(Q35358705)

7 August 2017

title

Combining physicochemical and evolutionary information for protein contact prediction (English)

1 reference

7 August 2017

Michael Schneider

1

1 reference

7 August 2017

Oliver Brock

series ordinal

2

1 reference

7 August 2017

language of work or name

English

0 references

publication date

22 October 2014

1 reference

7 August 2017

1 reference

7 August 2017

volume

9

1 reference

7 August 2017

issue

10

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7 August 2017

page(s)

e108438

1 reference

Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

22 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

scikit-learn

object named as

scikit-learn

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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12 July 2018

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Predicting protein contact map using evolutionary and physical constraints by integer programming

12 July 2018

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Evaluation of residue-residue contact prediction in CASP10

12 July 2018

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Protein structure alignment beyond spatial proximity

12 July 2018

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Protein structure prediction from sequence variation

12 July 2018

1 reference

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Predicting protein residue-residue contacts using deep networks and boosting

12 July 2018

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Deep architectures for protein contact map prediction

12 July 2018

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Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers

12 July 2018

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A position-specific distance-dependent statistical potential for protein structure and functional study

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12 July 2018

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Protein 3D structure computed from evolutionary sequence variation

12 July 2018

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12 July 2018

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12 July 2018

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A conformation ensemble approach to protein residue-residue contact

12 July 2018

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Evaluation of residue-residue contact predictions in CASP9

12 July 2018

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Improving protein structure prediction using multiple sequence-based contact predictions

12 July 2018

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Feature space resampling for protein conformational search.

12 July 2018

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Defining an essence of structure determining residue contacts in proteins

12 July 2018

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BCL::contact-low confidence fold recognition hits boost protein contact prediction and de novo structure determination.

12 July 2018

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SAM-T08, HMM-based protein structure prediction.

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

Improved residue contact prediction using support vector machines and a large feature set.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

A two-stage approach for improved prediction of residue contact maps.

12 July 2018

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12 July 2018

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Application of sparse NMR restraints to large-scale protein structure prediction.

12 July 2018

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12 July 2018

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12 July 2018

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PISCES: a protein sequence culling server

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

How well can we predict native contacts in proteins based on decoy structures and their energies?

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

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12 July 2018

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Ab initio protein structure prediction using a combined hierarchical approach.

12 July 2018

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Knowledge-based protein secondary structure assignment

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

The Protein Data Bank: a computer-based archival file for macromolecular structures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4206277

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

12 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0108438

Prediction of protein functional residues from sequence by probability density estimation.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0108438

10.1371/JOURNAL.PONE.0108438

21 January 2018

Identifiers

DOI

1 reference

7 August 2017

0 references

1 reference

7 August 2017

1 reference